Os02g0542700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0542700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 460.59 | 1.01 | 6.08 | 0.429 | 6.71 | 6.8 | 5.7 | 4.3 | 0.0855 | 6.99 | 1.169 | 779 | 11.3 | -- |
| 474.93 | 1.01 | 6.12 | 0.217 | 5.41 | 5.45 | 2.53 | -- | 0.0906 | 6.74 | 1.165 | 783 | 10.3 | -- |
| 501.1 | 1.04 | 6.1 | 0.602 | 6.11 | 6.43 | -- | 0.888 | 0.218 | 6.85 | 1.888 | 795 | 11.8 | -- |
| 483.29 | 1.02 | 6.16 | 0.489 | 5.33 | 5.53 | -- | -- | -0.0158 | 6.79 | 1.77 | 791 | 10.3 | -- |
| 1020.76 | 1.5 | 6.21 | 0.826 | -- | -3.19 | -- | -0.703 | 0.372 | -- | 1.888 | 795 | 11.8 | -- |
| 687.66 | 1.23 | 6.23 | 0.754 | 3.62 | -- | 1.86 | -- | 0.271 | 2.63 | -- | -- | -- | -- |
| 699.81 | 1.24 | 6.24 | 0.707 | 3.62 | -- | -- | -- | 0.26 | 2.6 | -- | -- | -- | -- |
| 701.69 | 1.24 | 6.23 | 0.709 | -- | -3.58 | -- | -- | 0.263 | -- | -12.35 | 16 | 15.6 | -- |
| 486.75 | 1.03 | 6.18 | -- | 5.2 | 5.47 | -- | -- | -0.0863 | 6.81 | 1.77 | 793 | 9.87 | -- |
| 1465.97 | 1.79 | 6.21 | 0.861 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 713 | 1.25 | 6.25 | -- | 3.63 | -- | -- | -- | 0.182 | 2.61 | -- | -- | -- | -- |
| 713 | 1.24 | 6.25 | -- | -- | -3.61 | -- | -- | 0.182 | -- | -15.65 | 21 | 15.6 | -- |
| 1485.54 | 1.8 | 6.24 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 462.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 3 | 464.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 468.19 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 11 | 470.24 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 12 | 470.30 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 26 | 472.24 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 27 | 472.41 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 29 | 472.67 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 52 | 474.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 58 | 476.88 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 59 | 476.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 78 | 481.40 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 81 | 481.46 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 84 | 481.78 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 108 | 485.69 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 129 | 487.72 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 134 | 488.01 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 228 | 495.93 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 8 |
| 258 | 498.14 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 298 | 501.20 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 5 |
| 356 | 504.94 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 1 |
| 359 | 505.24 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 2 |
| 368 | 506.05 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 373 | 506.65 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 387 | 507.41 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 417 | 508.70 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 428 | 509.74 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 17 |
| 438 | 510.17 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 470 | 512.11 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 489 | 512.44 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 11 |
| 543 | 513.76 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 566 | 514.51 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 684 | 518.46 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 700 | 519.43 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 727 | 520.53 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 14 |
| 802 | 522.67 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 876 | 525.50 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 886 | 525.76 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 923 | 526.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 942 | 527.53 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 995 | 528.98 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |