Os02g0540700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Arm repeat-containing protein.
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Os02g0540700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arm repeat-containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.4 | 0.498 | 11.8 | 1.16 | 0.516 | -1.1 | 1.59 | 0.574 | 0.249 | 21.2 | 20.84 | 916 | -- | -- |
| 113.12 | 0.495 | 11.8 | 1.04 | 0.515 | -1.15 | 1.77 | -- | 0.206 | 21.2 | 20.6 | 915 | -- | -- |
| 120.05 | 0.51 | 11.8 | 1.23 | 0.511 | -1.02 | -- | 1.24 | 0.283 | 21.1 | 20.96 | 859 | -- | -- |
| 124.21 | 0.519 | 11.8 | 0.988 | 0.508 | -1.17 | -- | -- | 0.224 | 21.2 | 20.83 | 944 | -- | -- |
| 133.66 | 0.538 | 11.8 | 1.24 | -- | -0.919 | -- | 1.24 | 0.278 | -- | 21.3 | 1065 | -- | -- |
| 152.09 | 0.578 | 11.9 | 0.586 | 0.359 | -- | 1.79 | -- | -0.0601 | 21.2 | -- | -- | -- | -- |
| 162.98 | 0.598 | 11.9 | 0.526 | 0.372 | -- | -- | -- | -0.0595 | 20.3 | -- | -- | -- | -- |
| 136.91 | 0.545 | 11.8 | 0.995 | -- | -1.06 | -- | -- | 0.227 | -- | 21.18 | 1129 | -- | -- |
| 145.65 | 0.562 | 11.9 | -- | 0.494 | -0.827 | -- | -- | 0.069 | 21 | 21.24 | 872 | -- | -- |
| 170.65 | 0.61 | 11.9 | 0.523 | -- | -- | -- | -- | -0.0636 | -- | -- | -- | -- | -- |
| 170.27 | 0.61 | 11.9 | -- | 0.37 | -- | -- | -- | -0.118 | 20.4 | -- | -- | -- | -- |
| 157.47 | 0.584 | 11.8 | -- | -- | -0.753 | -- | -- | 0.056 | -- | 21.39 | 1128 | -- | -- |
| 177.87 | 0.623 | 11.9 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.94 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 2 | 100.18 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 23 | 102.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 33 | 102.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 44 | 103.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 49 | 103.81 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 59 | 103.99 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 89 | 104.99 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 121 | 105.56 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 242 | 108.09 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 262 | 108.47 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 377 | 110.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 625 | 113.71 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 650 | 113.96 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 765 | 115.01 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 779 | 115.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 977 | 116.42 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |