Os02g0540400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
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Os02g0540400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.56 | 0.748 | 6.66 | 0.414 | 2.64 | -2.01 | -1.36 | -2.45 | 0.718 | 23 | 17.47 | 7648 | -- | -- |
| 255.26 | 0.744 | 6.57 | 0.951 | 2.59 | -1.75 | -1.54 | -- | 0.844 | 23 | 19.8 | 7324 | -- | -- |
| 260.66 | 0.752 | 6.65 | 0.531 | 2.62 | -1.95 | -- | -2.17 | 0.728 | 23.1 | 17.9 | 7289 | -- | -- |
| 262.75 | 0.755 | 6.56 | 1.01 | 2.62 | -1.74 | -- | -- | 0.88 | 23.1 | 20 | 7308 | -- | -- |
| 566.66 | 1.11 | 6.53 | 0.631 | -- | -3.13 | -- | -0.817 | 0.764 | -- | 17.9 | 7289 | -- | -- |
| 346.91 | 0.873 | 6.69 | 0.0121 | 2.57 | -- | -1.49 | -- | 0.286 | 23 | -- | -- | -- | -- |
| 356.32 | 0.884 | 6.69 | 0.072 | 2.57 | -- | -- | -- | 0.291 | 23 | -- | -- | -- | -- |
| 563.95 | 1.11 | 6.52 | 0.706 | -- | -2.97 | -- | -- | 0.788 | -- | 20 | 7308 | -- | -- |
| 279.77 | 0.779 | 6.61 | -- | 2.64 | -1.32 | -- | -- | 0.674 | 23.1 | 23.11 | 7331 | -- | -- |
| 768.2 | 1.3 | 6.62 | 0.13 | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
| 356.45 | 0.883 | 6.69 | -- | 2.57 | -- | -- | -- | 0.283 | 23 | -- | -- | -- | -- |
| 576.57 | 1.12 | 6.54 | -- | -- | -2.82 | -- | -- | 0.689 | -- | 20 | 7308 | -- | -- |
| 768.64 | 1.29 | 6.63 | -- | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.77 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 17 |
| 8 | 245.00 | temperature | 20 | 14400 | < th | dose dependent | rect. | 9 | 21 |
| 17 | 245.30 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 22 |
| 20 | 245.48 | temperature | 20 | 14400 | < th | dose dependent | sin | 15 | NA |
| 38 | 245.76 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 48 | 245.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 65 | 245.95 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 77 | 246.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 97 | 246.12 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 23 |
| 126 | 246.40 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 142 | 246.56 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 170 | 246.83 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 218 | 247.39 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 233 | 247.57 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 241 | 247.69 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 255 | 247.83 | temperature | 20 | 14400 | < th | dose dependent | sin | 4 | NA |
| 273 | 247.95 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 319 | 248.34 | temperature | 20 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 336 | 248.49 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 431 | 248.97 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 620 | 250.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 624 | 250.41 | temperature | 20 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 684 | 250.93 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 697 | 251.02 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 706 | 251.05 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 713 | 251.07 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 716 | 251.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 717 | 251.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 733 | 251.12 | temperature | 20 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 830 | 251.47 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 850 | 251.57 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 23 |