FiT-DB / Search/ Help/ Sample detail

Os02g0537900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vacuolar-type H+-translocating inorganic pyrophosphatase (EC 3.6.1.1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0127) R2 : 0.0169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0751 (0.0268) R2dN8 : 0.0219 R2N8 : 0.0169
σ : 0.24
deviance : 26.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.57 0.197 11.8 0.223 0.643 1.01 0.51 -0.209 0.125 19.2 0.73 726 -- --
17.57 0.195 11.8 0.219 0.632 1.01 0.592 -- 0.123 19.3 0.6924 740 -- --
17.38 0.194 11.8 0.217 0.617 0.986 -- -0.794 0.134 20.1 0.7366 810 -- --
18.19 0.199 11.8 0.218 0.776 1.15 -- -- 0.124 21.2 0.7338 957 -- --
22.55 0.222 11.8 0.147 -- 0.171 -- 0.000589 0.0918 -- 0.7366 810 -- --
20.22 0.211 11.8 0.125 0.308 -- -0.147 -- 0.0822 2.55 -- -- -- --
20.29 0.211 11.8 0.129 0.307 -- -- -- 0.0833 2.38 -- -- -- --
19.69 0.207 11.8 0.0831 -- 0.488 -- -- 0.0947 -- 1.08 1738 -- --
19.64 0.206 11.8 -- 0.777 1.13 -- -- 0.122 21.2 0.77 957 -- --
25.85 0.238 11.8 0.142 -- -- -- -- 0.0908 -- -- -- -- --
20.73 0.213 11.8 -- 0.309 -- -- -- 0.0689 2.39 -- -- -- --
19.69 0.207 11.8 -- -- 0.565 -- -- 0.0657 -- 1.001 1785 -- --
26.38 0.24 11.8 -- -- -- -- -- 0.0751 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.08 humidity 80.0 1440 > th dose independent rect. 11 1
2 16.16 humidity 80.0 1440 < th dose independent rect. 11 1
5 16.95 humidity 90.0 720 > th dose dependent rect. 6 17
9 16.98 humidity 80.0 1440 > th dose dependent rect. 11 1
17 17.08 humidity 90.0 720 > th dose dependent rect. 20 1
26 17.20 humidity 80.0 1440 > th dose dependent rect. 10 3
27 17.20 radiation 1.0 1440 < th dose dependent rect. 7 10
39 17.33 precipitation 0.1 720 < th dose independent sin 9 NA
40 17.33 precipitation 0.1 720 < th dose dependent sin 9 NA
43 17.34 precipitation 0.1 270 > th dose independent rect. 19 19
53 17.40 humidity 90.0 720 > th dose dependent rect. 18 5
56 17.41 radiation 1.0 720 < th dose dependent rect. 16 20
65 17.46 radiation 1.0 720 < th dose dependent sin 11 NA
80 17.49 precipitation 0.1 270 > th dose independent rect. 19 15
97 17.51 humidity 90.0 720 > th dose dependent sin 22 NA
104 17.53 precipitation 0.1 270 > th dose dependent rect. 19 19
107 17.54 precipitation 0.1 4320 > th dose dependent rect. 16 1
117 17.56 radiation 1.0 720 < th dose independent rect. 16 20
122 17.57 precipitation 0.1 720 > th dose independent rect. 19 9
126 17.57 wind 3.0 14400 < th dose dependent rect. 21 2
133 17.58 wind 3.0 14400 < th dose dependent rect. 21 4
134 17.58 precipitation 0.1 4320 > th dose dependent rect. 5 12
137 17.59 precipitation 0.1 4320 > th dose dependent rect. 13 4
140 17.59 precipitation 0.1 4320 > th dose dependent rect. 11 6
141 17.59 precipitation 0.1 4320 > th dose dependent rect. 7 10
168 17.63 precipitation 0.1 1440 < th dose independent rect. 5 8
171 17.63 precipitation 0.1 1440 < th dose dependent rect. 5 8
174 17.63 humidity 90.0 720 > th dose dependent rect. 18 18
177 17.64 humidity 80.0 14400 > th dose independent rect. 13 1
178 17.64 humidity 80.0 1440 < th dose independent rect. 9 10
184 17.65 humidity 80.0 1440 > th dose independent rect. 9 10
191 17.66 precipitation 0.1 4320 > th dose independent rect. 13 4
192 17.66 precipitation 0.1 4320 < th dose independent rect. 11 6
194 17.66 precipitation 0.1 4320 < th dose independent rect. 5 12
197 17.66 precipitation 0.1 4320 < th dose dependent rect. 11 6
199 17.66 precipitation 0.1 4320 < th dose dependent rect. 5 12
203 17.67 radiation 1.0 720 > th dose independent sin 2 NA
204 17.67 precipitation 0.1 4320 > th dose independent rect. 16 1
206 17.67 precipitation 0.1 4320 < th dose independent rect. 13 4
213 17.67 precipitation 0.1 4320 < th dose dependent rect. 13 4
224 17.68 precipitation 0.1 4320 < th dose independent rect. 16 1
225 17.68 precipitation 0.1 4320 < th dose independent rect. 7 10
230 17.68 precipitation 0.1 4320 < th dose dependent rect. 16 1
232 17.68 precipitation 0.1 1440 > th dose dependent rect. 5 3
235 17.68 precipitation 0.1 4320 < th dose dependent rect. 7 10
239 17.69 humidity 90.0 1440 > th dose independent rect. 20 1
242 17.69 precipitation 0.1 4320 > th dose independent rect. 5 12
248 17.69 radiation 1.0 720 < th dose dependent rect. 20 23
261 17.70 precipitation 0.1 270 > th dose dependent rect. 19 16
273 17.71 precipitation 0.1 4320 > th dose independent rect. 7 10
290 17.72 precipitation 0.1 270 < th dose independent sin 4 NA
291 17.72 precipitation 0.1 1440 > th dose independent rect. 5 3
299 17.72 radiation 1.0 720 < th dose dependent no NA NA
300 17.72 precipitation 0.1 270 < th dose dependent sin 4 NA
306 17.73 precipitation 0.1 270 > th dose independent sin 10 NA
309 17.73 humidity 90.0 720 > th dose independent rect. 6 18
310 17.73 radiation 1.0 720 > th dose independent rect. 16 23
338 17.74 radiation 1.0 720 < th dose dependent rect. 4 23
339 17.74 radiation 1.0 720 < th dose dependent rect. 22 23
340 17.75 radiation 1.0 720 > th dose independent sin 11 NA
341 17.75 wind 1.0 4320 > th dose independent rect. 17 2
343 17.75 precipitation 0.1 1440 < th dose independent rect. 5 4
344 17.75 precipitation 0.1 1440 < th dose independent rect. 5 6
352 17.75 precipitation 0.1 1440 < th dose dependent rect. 5 4
354 17.75 precipitation 0.1 1440 < th dose dependent rect. 5 6
361 17.75 radiation 1.0 720 < th dose dependent rect. 1 23
362 17.76 radiation 1.0 720 < th dose independent sin 11 NA
371 17.76 precipitation 0.1 270 > th dose dependent sin 9 NA
379 17.76 radiation 1.0 720 < th dose dependent rect. 9 23
381 17.77 precipitation 0.1 1440 > th dose independent rect. 5 6
414 17.79 humidity 90.0 1440 < th dose independent rect. 20 1
438 17.80 precipitation 0.1 14400 > th dose independent rect. 13 7
439 17.80 precipitation 0.1 14400 < th dose independent rect. 13 7
442 17.80 radiation 1.0 720 > th dose independent rect. 13 23
447 17.80 precipitation 0.1 14400 < th dose dependent rect. 13 7
453 17.81 humidity 80.0 1440 < th dose independent sin 0 NA
459 17.81 radiation 1.0 720 < th dose independent rect. 20 23
475 17.82 radiation 1.0 1440 > th dose independent rect. 7 10
476 17.82 radiation 1.0 1440 < th dose independent rect. 7 10
480 17.82 radiation 1.0 720 < th dose independent rect. 22 23
494 17.83 precipitation 0.1 720 > th dose independent rect. 18 13
506 17.83 radiation 1.0 720 < th dose dependent rect. 5 16
510 17.84 humidity 80.0 1440 > th dose independent sin 23 NA
513 17.84 radiation 1.0 720 < th dose independent no NA NA
532 17.84 wind 3.0 14400 < th dose dependent rect. 21 15
541 17.85 radiation 1.0 720 > th dose independent no NA NA
545 17.85 radiation 1.0 720 > th dose independent rect. 5 14
602 17.85 humidity 90.0 720 > th dose dependent no NA NA
621 17.86 radiation 1.0 1440 > th dose independent rect. 7 8
664 17.87 radiation 1.0 720 > th dose independent rect. 18 23
665 17.87 humidity 90.0 720 > th dose dependent sin 14 NA
685 17.88 radiation 1.0 1440 < th dose independent rect. 7 8
686 17.88 precipitation 0.1 1440 < th dose independent rect. 19 8
710 17.88 radiation 1.0 720 > th dose independent rect. 10 23
712 17.88 precipitation 0.1 1440 < th dose dependent rect. 19 8
715 17.88 humidity 70.0 1440 > th dose dependent rect. 2 17
721 17.88 radiation 1.0 1440 < th dose dependent rect. 7 22
731 17.89 radiation 1.0 720 > th dose independent rect. 17 16
732 17.89 radiation 1.0 720 < th dose independent rect. 1 23
733 17.89 radiation 1.0 720 < th dose independent rect. 4 23
734 17.89 radiation 1.0 720 < th dose independent rect. 9 23
768 17.90 radiation 1.0 720 < th dose dependent sin 5 NA
781 17.90 radiation 1.0 1440 < th dose dependent rect. 7 17
799 17.91 wind 3.0 14400 < th dose independent rect. 21 7
822 17.91 precipitation 0.1 14400 > th dose dependent rect. 13 7
863 17.92 radiation 1.0 1440 < th dose dependent rect. 16 1
917 17.94 precipitation 0.1 270 > th dose independent rect. 1 3
923 17.94 wind 3.0 14400 < th dose independent rect. 21 14
934 17.94 humidity 80.0 14400 > th dose dependent rect. 13 1
939 17.94 precipitation 0.1 720 > th dose dependent rect. 19 12