Os02g0537400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chaperonin clpA/B family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0537400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Chaperonin clpA/B family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.3 | 0.511 | 9.67 | 3.46 | 1.13 | -0.704 | -1.24 | 3.9 | 0.442 | 20.4 | 20.29 | 1540 | -- | -- |
| 138.45 | 0.548 | 9.75 | 3.07 | 1.23 | -1.63 | -1.81 | -- | 0.374 | 20.5 | 18.8 | 2222 | -- | -- |
| 123.12 | 0.517 | 9.67 | 3.51 | 1.13 | -0.728 | -- | 3.92 | 0.448 | 20.4 | 20.25 | 1549 | -- | -- |
| 144.45 | 0.56 | 9.77 | 3.06 | 1.19 | -1.67 | -- | -- | 0.344 | 20.6 | 18.7 | 2196 | -- | -- |
| 194.22 | 0.649 | 9.66 | 3.56 | -- | -0.752 | -- | 4.07 | 0.428 | -- | 20.3 | 1562 | -- | -- |
| 177.69 | 0.625 | 9.84 | 2.29 | 1.16 | -- | -1.43 | -- | 0.0378 | 20.3 | -- | -- | -- | -- |
| 184.07 | 0.635 | 9.84 | 2.33 | 1.16 | -- | -- | -- | 0.037 | 20.3 | -- | -- | -- | -- |
| 216.6 | 0.685 | 9.74 | 3.15 | -- | -1.79 | -- | -- | 0.346 | -- | 18.43 | 2869 | -- | -- |
| 326.36 | 0.841 | 9.89 | -- | 1.14 | -0.48 | -- | -- | -0.185 | 20.5 | 17.1 | 1838 | -- | -- |
| 258.61 | 0.751 | 9.81 | 2.32 | -- | -- | -- | -- | 0.0245 | -- | -- | -- | -- | -- |
| 327.27 | 0.846 | 9.9 | -- | 1.15 | -- | -- | -- | -0.223 | 20.5 | -- | -- | -- | -- |
| 398.11 | 0.929 | 9.85 | -- | -- | -0.912 | -- | -- | -0.209 | -- | 14.7 | 1459 | -- | -- |
| 401.03 | 0.935 | 9.87 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.17 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 16 | 112.44 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 46 | 114.22 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 49 | 115.92 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 55 | 116.28 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 57 | 116.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 62 | 116.71 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 71 | 117.07 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 72 | 117.96 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 73 | 117.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 76 | 118.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 78 | 118.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 83 | 118.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 99 | 118.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 104 | 118.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 106 | 118.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 108 | 118.40 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 116 | 118.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 129 | 118.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 148 | 118.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 174 | 118.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 180 | 118.79 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 200 | 118.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 201 | 118.86 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 203 | 118.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 256 | 119.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 259 | 119.14 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 269 | 119.19 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 304 | 119.36 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 307 | 119.40 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 310 | 119.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 322 | 119.47 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 326 | 119.49 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 363 | 119.62 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 392 | 119.80 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 448 | 120.19 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 461 | 120.33 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 581 | 121.69 | humidity | 80 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 592 | 121.89 | humidity | 50 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 601 | 122.07 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 611 | 122.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 615 | 122.20 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 631 | 122.25 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 638 | 122.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 640 | 122.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 642 | 122.33 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 674 | 122.68 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 700 | 122.93 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 708 | 122.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 11 |
| 712 | 123.01 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 734 | 123.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 17 |
| 739 | 123.22 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 756 | 123.28 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 758 | 123.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 762 | 123.34 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 768 | 123.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 771 | 123.43 | wind | 9 | 43200 | < th | dose independent | sin | 7 | NA |
| 787 | 123.52 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 797 | 123.59 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 11 |
| 804 | 123.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 805 | 123.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 820 | 123.72 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 837 | 123.78 | wind | 7 | 43200 | > th | dose dependent | sin | 7 | NA |
| 844 | 123.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 851 | 123.86 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 869 | 123.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 876 | 124.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 884 | 124.02 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 898 | 124.06 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 909 | 124.10 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 912 | 124.11 | wind | 9 | 43200 | > th | dose independent | sin | 7 | NA |
| 922 | 124.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 929 | 124.17 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 930 | 124.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 937 | 124.21 | temperature | 25 | 4320 | < th | dose dependent | sin | 0 | NA |
| 968 | 124.33 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 1 |