Os02g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.94 | 0.215 | 9.63 | -0.645 | 0.248 | 0.278 | 0.233 | 1.23 | -0.164 | 6.59 | 24 | 8 | -- | -- |
| 21.75 | 0.219 | 9.65 | -0.807 | 0.254 | 0.383 | 0.0901 | -- | -0.216 | 6.24 | 23.8 | 14 | -- | -- |
| 21.01 | 0.215 | 9.63 | -0.65 | 0.249 | 0.292 | -- | 1.18 | -0.168 | 6.34 | 23.99 | 5 | -- | -- |
| 21.76 | 0.219 | 9.65 | -0.808 | 0.257 | 0.392 | -- | -- | -0.218 | 6.04 | 23.8 | 11 | -- | -- |
| 23.68 | 0.228 | 9.63 | -0.636 | -- | 0.216 | -- | 0.972 | -0.161 | -- | 21.8 | 6 | -- | -- |
| 23.65 | 0.228 | 9.64 | -0.755 | 0.187 | -- | 0.415 | -- | -0.167 | 9.4 | -- | -- | -- | -- |
| 24.18 | 0.23 | 9.64 | -0.742 | 0.194 | -- | -- | -- | -0.168 | 8.54 | -- | -- | -- | -- |
| 24.44 | 0.23 | 9.65 | -0.793 | -- | 0.276 | -- | -- | -0.209 | -- | 21.6 | 2 | -- | -- |
| 38.14 | 0.289 | 9.62 | -- | 0.205 | 0.185 | -- | -- | -0.103 | 7.45 | 24.2 | 4 | -- | -- |
| 26.3 | 0.24 | 9.64 | -0.741 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 38.68 | 0.291 | 9.62 | -- | 0.192 | -- | -- | -- | -0.0849 | 8.83 | -- | -- | -- | -- |
| 40.32 | 0.296 | 9.63 | -- | -- | 0.132 | -- | -- | -0.0938 | -- | 24.1 | 2 | -- | -- |
| 40.78 | 0.298 | 9.62 | -- | -- | -- | -- | -- | -0.0835 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.47 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 2 | 19.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 6 | 19.67 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 10 |
| 22 | 19.98 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 27 | 20.05 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 36 | 20.08 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 42 | 20.11 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 6 |
| 47 | 20.14 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 7 | 18 |
| 48 | 20.15 | radiation | 10 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 51 | 20.16 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 70 | 20.24 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 84 | 20.29 | radiation | 10 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 91 | 20.32 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 95 | 20.32 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 97 | 20.33 | atmosphere | 995 | 270 | > th | dose dependent | sin | 23 | NA |
| 106 | 20.35 | radiation | 10 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 132 | 20.41 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 10 | 16 |
| 194 | 20.51 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 195 | 20.52 | atmosphere | 1005 | 30 | > th | dose independent | sin | 19 | NA |
| 201 | 20.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 212 | 20.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 230 | 20.55 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 15 |
| 273 | 20.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 276 | 20.59 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 8 | 11 |
| 286 | 20.60 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 22 |
| 322 | 20.63 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 10 | 19 |
| 334 | 20.64 | humidity | 50 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 341 | 20.64 | humidity | 90 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 348 | 20.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 349 | 20.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 350 | 20.65 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 6 |
| 375 | 20.66 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 376 | 20.66 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 8 | 13 |
| 432 | 20.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 9 |
| 452 | 20.71 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 453 | 20.71 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 468 | 20.72 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 474 | 20.73 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 484 | 20.73 | atmosphere | 995 | 720 | > th | dose dependent | sin | 3 | NA |
| 497 | 20.73 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 523 | 20.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 536 | 20.76 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 568 | 20.77 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 613 | 20.79 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 19 |
| 614 | 20.79 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 658 | 20.81 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 9 |
| 690 | 20.81 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 718 | 20.82 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 722 | 20.82 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 727 | 20.83 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 6 |
| 730 | 20.83 | temperature | 30 | 90 | < th | dose independent | rect. | 23 | 18 |
| 751 | 20.84 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 10 |
| 762 | 20.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 771 | 20.85 | wind | 1 | 90 | > th | dose independent | rect. | 7 | 21 |
| 772 | 20.85 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 807 | 20.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 821 | 20.87 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 847 | 20.88 | atmosphere | 1015 | 270 | < th | dose dependent | sin | 0 | NA |
| 879 | 20.89 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 928 | 20.91 | humidity | 50 | 4320 | > th | dose independent | rect. | 3 | 7 |
| 961 | 20.92 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 964 | 20.92 | humidity | 90 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 991 | 20.93 | temperature | 30 | 10 | > th | dose independent | sin | 0 | NA |
| 1000 | 20.93 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |