Os02g0535000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0535000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.9 | 0.311 | 12.2 | -0.743 | 0.0576 | -0.632 | -1.15 | 0.956 | -0.83 | 18 | 20 | 1441 | -- | -- |
| 46.22 | 0.317 | 12.2 | -0.74 | 0.0578 | -0.628 | -1.14 | -- | -0.824 | 17.9 | 19.58 | 1425 | -- | -- |
| 47.14 | 0.32 | 12.2 | -0.743 | 0.0582 | -0.638 | -- | 0.966 | -0.828 | 17.3 | 19.98 | 1416 | -- | -- |
| 49.38 | 0.327 | 12.2 | -0.726 | 0.0493 | -0.619 | -- | -- | -0.805 | 17.4 | 19.58 | 1435 | -- | -- |
| 47.29 | 0.32 | 12.2 | -0.741 | -- | -0.642 | -- | 0.952 | -0.831 | -- | 19.98 | 1416 | -- | -- |
| 60.43 | 0.364 | 12.1 | -0.629 | 0.0456 | -- | -1.21 | -- | -0.668 | 17.8 | -- | -- | -- | -- |
| 63.9 | 0.374 | 12.1 | -0.622 | 0.0558 | -- | -- | -- | -0.673 | 20.8 | -- | -- | -- | -- |
| 49.45 | 0.328 | 12.2 | -0.674 | -- | -0.61 | -- | -- | -0.809 | -- | 19.58 | 1435 | -- | -- |
| 60.97 | 0.364 | 12.2 | -- | 0.0466 | -0.616 | -- | -- | -0.802 | 17.2 | 20 | 1459 | -- | -- |
| 64.08 | 0.374 | 12.1 | -0.622 | -- | -- | -- | -- | -0.674 | -- | -- | -- | -- | -- |
| 74.09 | 0.403 | 12.1 | -- | 0.0585 | -- | -- | -- | -0.604 | 20 | -- | -- | -- | -- |
| 60.91 | 0.364 | 12.2 | -- | -- | -0.594 | -- | -- | -0.762 | -- | 20 | 1492 | -- | -- |
| 74.28 | 0.402 | 12.1 | -- | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 2 | 42.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 10 | 42.44 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 13 | 42.50 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 26 | 42.56 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 47 | 42.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 68 | 42.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 73 | 42.87 | humidity | 80 | 1440 | < th | dose dependent | sin | 3 | NA |
| 111 | 43.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 117 | 43.13 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 126 | 43.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 158 | 43.34 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 171 | 43.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 176 | 43.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 232 | 43.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 237 | 43.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 244 | 43.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 264 | 43.76 | radiation | 20 | 1440 | < th | dose independent | sin | 22 | NA |
| 271 | 43.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 272 | 43.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 282 | 43.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 315 | 43.82 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 347 | 43.88 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 349 | 43.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 359 | 43.90 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 360 | 43.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 397 | 43.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 437 | 43.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 441 | 43.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 469 | 43.99 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 602 | 44.13 | humidity | 70 | 1440 | > th | dose independent | sin | 2 | NA |
| 615 | 44.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 616 | 44.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 617 | 44.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 624 | 44.16 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 681 | 44.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 757 | 44.27 | humidity | 70 | 1440 | < th | dose independent | sin | 2 | NA |
| 761 | 44.27 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 772 | 44.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 856 | 44.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 884 | 44.34 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 937 | 44.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 949 | 44.45 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 952 | 44.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |