Os02g0533800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0533800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.63 | 0.492 | 12.3 | -0.0364 | 3.53 | 2.85 | -0.274 | -3.35 | 0.407 | 20.4 | 4.656 | 865 | -- | -- |
| 113.86 | 0.497 | 12.3 | -0.0906 | 3.63 | 3.01 | 1.53 | -- | 0.406 | 20.3 | 3.508 | 860 | -- | -- |
| 109.6 | 0.488 | 12.3 | -0.0218 | 3.58 | 2.91 | -- | -2.98 | 0.407 | 20.3 | 4.154 | 865 | -- | -- |
| 120.46 | 0.511 | 12.3 | -0.0994 | 3.55 | 2.85 | -- | -- | 0.379 | 20.6 | 3.511 | 917 | -- | -- |
| 174.46 | 0.619 | 12.3 | -0.311 | -- | 1.26 | -- | 0.0693 | 0.272 | -- | 3.78 | 3074 | -- | -- |
| 138.35 | 0.551 | 12.3 | -0.296 | 1.84 | -- | 0.827 | -- | 0.224 | 21.9 | -- | -- | -- | -- |
| 140.94 | 0.556 | 12.3 | -0.329 | 1.83 | -- | -- | -- | 0.222 | 21.9 | -- | -- | -- | -- |
| 174.49 | 0.618 | 12.3 | -0.311 | -- | 1.26 | -- | -- | 0.272 | -- | 3.78 | 3074 | -- | -- |
| 120.71 | 0.512 | 12.3 | -- | 3.64 | 3 | -- | -- | 0.408 | 20.6 | 3.48 | 924 | -- | -- |
| 342.51 | 0.865 | 12.3 | -0.308 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 143.8 | 0.561 | 12.3 | -- | 1.83 | -- | -- | -- | 0.258 | 21.9 | -- | -- | -- | -- |
| 177.04 | 0.622 | 12.2 | -- | -- | 1.26 | -- | -- | 0.307 | -- | 3.78 | 3074 | -- | -- |
| 345.01 | 0.867 | 12.3 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.72 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 14 |
| 3 | 107.48 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 11 | 107.84 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 15 | 108.12 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 18 | 108.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 28 | 108.70 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 17 |
| 71 | 109.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 80 | 109.96 | humidity | 70 | 720 | > th | dose independent | rect. | 10 | 14 |
| 125 | 110.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 140 | 110.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 162 | 111.42 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 201 | 111.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 238 | 112.59 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 18 |
| 240 | 112.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 248 | 112.68 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 255 | 112.76 | humidity | 70 | 720 | < th | dose independent | sin | 14 | NA |
| 262 | 112.81 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 268 | 112.91 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 276 | 112.96 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 301 | 113.14 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 326 | 113.30 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 339 | 113.40 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 361 | 113.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 380 | 113.60 | humidity | 60 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 386 | 113.65 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 22 |
| 399 | 113.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 431 | 113.95 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 467 | 114.11 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 476 | 114.15 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 22 |
| 504 | 114.33 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 514 | 114.38 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 542 | 114.45 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 572 | 114.54 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 574 | 114.55 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 589 | 114.62 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 596 | 114.64 | humidity | 70 | 720 | < th | dose independent | rect. | 11 | 21 |
| 675 | 114.90 | radiation | 10 | 720 | < th | dose dependent | sin | 21 | NA |
| 677 | 114.90 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 679 | 114.91 | radiation | 10 | 720 | < th | dose dependent | sin | 14 | NA |
| 681 | 114.92 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 23 |
| 692 | 114.99 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 16 |
| 697 | 115.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 723 | 115.10 | humidity | 70 | 720 | < th | dose independent | rect. | 11 | 9 |
| 742 | 115.12 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 751 | 115.15 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 759 | 115.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 838 | 115.38 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 844 | 115.42 | humidity | 70 | 1440 | < th | dose independent | sin | 9 | NA |
| 855 | 115.44 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 868 | 115.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 886 | 115.54 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 919 | 115.63 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 932 | 115.64 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 988 | 115.68 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 990 | 115.68 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 4 |