Os02g0533000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0533000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.68 | 0.252 | 12.8 | -0.294 | 1.31 | -0.686 | 0.392 | 0.305 | -0.157 | 10 | 20.14 | 1560 | -- | -- |
| 28.89 | 0.25 | 12.8 | -0.32 | 1.32 | -0.714 | 0.362 | -- | -0.177 | 10 | 20.1 | 1560 | -- | -- |
| 29.25 | 0.252 | 12.8 | -0.272 | 1.31 | -0.681 | -- | 0.322 | -0.151 | 10 | 20.4 | 1586 | -- | -- |
| 29.43 | 0.253 | 12.8 | -0.322 | 1.31 | -0.73 | -- | -- | -0.168 | 10 | 20.3 | 1567 | -- | -- |
| 117.76 | 0.505 | 12.8 | -0.153 | -- | -0.922 | -- | 0.625 | -0.0614 | -- | 25.3 | 2230 | -- | -- |
| 39.22 | 0.294 | 12.9 | -0.643 | 1.31 | -- | 0.461 | -- | -0.321 | 10 | -- | -- | -- | -- |
| 40.05 | 0.296 | 12.9 | -0.624 | 1.31 | -- | -- | -- | -0.32 | 10.1 | -- | -- | -- | -- |
| 100.85 | 0.468 | 12.8 | -0.269 | -- | -0.734 | -- | -- | -0.000216 | -- | 25.2 | 752 | -- | -- |
| 30.58 | 0.258 | 12.8 | -- | 1.31 | -0.908 | -- | -- | -0.0962 | 10 | 19.6 | 2912 | -- | -- |
| 142.95 | 0.559 | 12.9 | -0.641 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 50.32 | 0.332 | 12.8 | -- | 1.31 | -- | -- | -- | -0.25 | 10.1 | -- | -- | -- | -- |
| 98.04 | 0.461 | 12.8 | -- | -- | -1.09 | -- | -- | 0.106 | -- | 25.27 | 762 | -- | -- |
| 153.8 | 0.579 | 12.9 | -- | -- | -- | -- | -- | -0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 27.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 28.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 8 | 28.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 14 | 28.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 22 | 28.22 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 23 | 28.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 30 | 28.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 40 | 28.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 44 | 28.27 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 78 | 28.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 85 | 28.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 110 | 28.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 162 | 28.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 250 | 28.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 267 | 28.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 437 | 28.85 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 493 | 28.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 494 | 28.93 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 525 | 28.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 533 | 28.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 541 | 29.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 572 | 29.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 586 | 29.09 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 596 | 29.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 636 | 29.16 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 642 | 29.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 680 | 29.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 718 | 29.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 719 | 29.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 765 | 29.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 809 | 29.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 894 | 29.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 912 | 29.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 914 | 29.58 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 979 | 29.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 984 | 29.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 985 | 29.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 3 |