Os02g0532500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Germin family protein.
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Os02g0532500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Germin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 306.42 | 0.822 | 11.4 | -2.23 | 3.7 | 4.04 | -0.426 | 0.56 | -0.77 | 12.5 | 71 | 717 | 15.9 | 7.13 |
| 305.62 | 0.814 | 11.4 | -2.19 | 3.7 | 4.03 | -0.959 | -- | -0.786 | 12.5 | 71.14 | 722 | 16 | 7 |
| 305.26 | 0.814 | 11.4 | -2.24 | 3.65 | 3.98 | -- | 0.95 | -0.788 | 12.5 | 71 | 723 | 16 | 6.97 |
| 307.45 | 0.817 | 11.4 | -2.22 | 3.74 | 3.92 | -- | -- | -0.806 | 12.6 | 71.07 | 714 | 16.3 | 6.68 |
| 427.01 | 0.962 | 11.4 | -2.18 | -- | 3.27 | -- | 0.869 | -0.956 | -- | 69.82 | 1268 | 16.5 | 6.37 |
| 455.72 | 1 | 11.4 | -2.38 | 1.34 | -- | -0.817 | -- | -0.56 | 7.52 | -- | -- | -- | -- |
| 457.55 | 1 | 11.4 | -2.4 | 1.34 | -- | -- | -- | -0.559 | 7.47 | -- | -- | -- | -- |
| 377.42 | 0.905 | 11.5 | -2.21 | -- | 2.62 | -- | -- | -0.734 | -- | 69 | 1259 | 16.5 | 9.18 |
| 436.93 | 0.974 | 11.4 | -- | 4.1 | 4.29 | -- | -- | -0.637 | 12.7 | 71 | 711 | 16.5 | 6.57 |
| 552.9 | 1.1 | 11.4 | -2.38 | -- | -- | -- | -- | -0.538 | -- | -- | -- | -- | -- |
| 609.42 | 1.15 | 11.3 | -- | 1.32 | -- | -- | -- | -0.292 | 7.59 | -- | -- | -- | -- |
| 508.27 | 1.05 | 11.4 | -- | -- | 2.66 | -- | -- | -0.457 | -- | 69.84 | 1246 | 16 | 10.4 |
| 702.3 | 1.24 | 11.3 | -- | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.89 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 7 |
| 3 | 309.61 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 4 | 310.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 5 | 310.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 17 | 314.01 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 14 |
| 27 | 317.94 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 34 | 318.67 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 7 |
| 59 | 320.95 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 70 | 321.85 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 82 | 323.45 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 87 | 323.96 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 132 | 326.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 178 | 327.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 200 | 328.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 210 | 328.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 212 | 328.68 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 251 | 329.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 335 | 329.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 399 | 330.30 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 436 | 330.55 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 442 | 330.60 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 519 | 332.15 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 528 | 332.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 590 | 334.21 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 630 | 335.14 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 722 | 337.01 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 725 | 337.02 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 757 | 337.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 758 | 337.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 764 | 337.85 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 793 | 338.34 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 867 | 339.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 887 | 339.91 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 900 | 340.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 953 | 340.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 957 | 340.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 960 | 340.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 972 | 341.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 7 |
| 973 | 341.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |