Os02g0531600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PEBP family protein.
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Os02g0531600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PEBP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.55 | 0.462 | 3.21 | 0.657 | 0.0462 | 0.578 | 1.61 | 0.616 | 0.00271 | 18.7 | 24.4 | 4107 | -- | -- |
| 96.42 | 0.457 | 3.18 | 0.803 | 0.105 | 0.612 | 1.58 | -- | 0.0825 | 18.6 | 24.6 | 2112 | -- | -- |
| 102.02 | 0.47 | 3.21 | 0.559 | 0.0685 | 0.558 | -- | 0.799 | 0.05 | 17.5 | 22.66 | 4229 | -- | -- |
| 102.82 | 0.472 | 3.18 | 0.773 | 0.149 | 0.611 | -- | -- | 0.0789 | 17.9 | 24.83 | 2109 | -- | -- |
| 102.25 | 0.471 | 3.21 | 0.543 | -- | 0.581 | -- | 0.902 | 0.0417 | -- | 22.66 | 4211 | -- | -- |
| 107.1 | 0.485 | 3.23 | 0.581 | 0.0676 | -- | 1.63 | -- | -0.11 | 18.4 | -- | -- | -- | -- |
| 113.06 | 0.498 | 3.22 | 0.563 | 0.128 | -- | -- | -- | -0.103 | 14.9 | -- | -- | -- | -- |
| 103.2 | 0.473 | 3.17 | 0.791 | -- | 0.527 | -- | -- | 0.12 | -- | 23.6 | 2791 | -- | -- |
| 116.9 | 0.504 | 3.21 | -- | 0.124 | 0.363 | -- | -- | -0.0616 | 17.3 | 25.44 | 2133 | -- | -- |
| 114.01 | 0.499 | 3.22 | 0.558 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 121.42 | 0.515 | 3.23 | -- | 0.117 | -- | -- | -- | -0.165 | 14.9 | -- | -- | -- | -- |
| 117.02 | 0.504 | 3.22 | -- | -- | 0.339 | -- | -- | -0.11 | -- | 27 | 2582 | -- | -- |
| 122.21 | 0.516 | 3.23 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.96 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 18 | 93.99 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 46 | 94.16 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 75 | 94.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 81 | 94.23 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 98 | 94.25 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 16 | NA |
| 115 | 94.27 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 122 | 94.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 187 | 94.35 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 220 | 94.38 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 302 | 94.44 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 317 | 94.44 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 322 | 94.44 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 337 | 94.45 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 345 | 94.45 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 420 | 94.51 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 424 | 94.52 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 23 | NA |
| 425 | 94.52 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 442 | 94.53 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 445 | 94.53 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 10 |
| 496 | 94.56 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 499 | 94.56 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 549 | 94.58 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 570 | 94.60 | atmosphere | 1015 | 43200 | > th | dose dependent | no | NA | NA |
| 583 | 94.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 22 |
| 586 | 94.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 587 | 94.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 598 | 94.61 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 622 | 94.62 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 742 | 94.68 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 744 | 94.68 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 837 | 94.73 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 922 | 94.78 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 10 | NA |
| 946 | 94.80 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 960 | 94.81 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 962 | 94.81 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 975 | 94.81 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 982 | 94.82 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 16 | NA |