Os02g0530500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0530500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.88 | 0.722 | 3.08 | -0.494 | 0.0694 | 1.71 | 0.966 | -5.39 | 0.0302 | 9.8 | 20.05 | 383 | 2.38 | 5.98 |
| 255.05 | 0.744 | 3.09 | -0.843 | 0.181 | 2.35 | -0.869 | -- | -0.0687 | 7.45 | 19.03 | 409 | 3.12 | 5.45 |
| 236.95 | 0.717 | 3.09 | -0.575 | 0.14 | 1.76 | -- | -4.73 | 0.0251 | 8 | 19.6 | 405 | 2.13 | 5.86 |
| 257.51 | 0.747 | 3.11 | -0.808 | 0.229 | 2.3 | -- | -- | -0.0449 | 6.5 | 19.09 | 413 | 2.97 | 5.62 |
| 237.9 | 0.718 | 3.09 | -0.538 | -- | 1.78 | -- | -4.48 | 0.0181 | -- | 19.62 | 410 | 2.08 | 5.88 |
| 294.1 | 0.804 | 3.15 | -1.07 | 0.457 | -- | -1.7 | -- | -0.232 | 7.91 | -- | -- | -- | -- |
| 302.51 | 0.814 | 3.15 | -1.11 | 0.456 | -- | -- | -- | -0.229 | 8.15 | -- | -- | -- | -- |
| 259.79 | 0.751 | 3.09 | -0.79 | -- | 2.12 | -- | -- | -0.00799 | -- | 19.2 | 434 | 2.03 | 6.53 |
| 273.88 | 0.771 | 3.09 | -- | 0.186 | 2.62 | -- | -- | 0.0478 | 5.29 | 19 | 418 | 2.75 | 6.07 |
| 313.97 | 0.828 | 3.16 | -1.11 | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
| 334.99 | 0.856 | 3.12 | -- | 0.451 | -- | -- | -- | -0.106 | 8.32 | -- | -- | -- | -- |
| 275.42 | 0.773 | 3.09 | -- | -- | 2.42 | -- | -- | 0.0624 | -- | 19.11 | 442 | 2 | 6.8 |
| 346.25 | 0.869 | 3.13 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.19 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 6 |
| 4 | 249.22 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 10 |
| 5 | 249.43 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 59 | 253.12 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 65 | 253.42 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 75 | 253.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 104 | 255.07 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 114 | 255.07 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 146 | 256.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 8 |
| 183 | 256.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 186 | 257.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 199 | 257.25 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 415 | 261.10 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 439 | 261.48 | temperature | 10 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 485 | 261.67 | temperature | 15 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 507 | 261.94 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 590 | 262.62 | temperature | 10 | 43200 | < th | dose dependent | sin | 19 | NA |
| 603 | 262.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 640 | 263.06 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 641 | 263.07 | temperature | 10 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 648 | 263.12 | temperature | 10 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 673 | 263.19 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 684 | 263.25 | temperature | 15 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 691 | 263.35 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 697 | 263.38 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 738 | 263.53 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 769 | 263.61 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 807 | 263.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 808 | 263.73 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 813 | 263.74 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 833 | 263.83 | temperature | 15 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 878 | 264.03 | temperature | 10 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 889 | 264.10 | temperature | 10 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 898 | 264.15 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 905 | 264.18 | temperature | 10 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 980 | 264.44 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 1 |