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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0529900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.031) R2 : 0.00475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0964 (0.0653) R2dN8 : 0.00614 R2N8 : 0.00475
σ : 0.584
deviance : 156.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.09 0.576 3.19 0.546 0.0938 -0.279 0.196 -1.93 0.02 1.74 19.6 4521 -- --
151.39 0.577 3.26 0.321 5.6e-05 0.331 0.292 -- -0.021 22.1 19.6 4521 -- --
150.21 0.571 3.19 0.546 0.0985 -0.277 -- -1.94 0.0189 2.62 19.59 4512 -- --
151.62 0.577 3.26 0.304 0.0431 0.314 -- -- -0.0254 4.29 19.59 4512 -- --
150.76 0.572 3.19 0.536 -- -0.299 -- -1.96 0.0208 -- 19.5 4513 -- --
154.8 0.583 3.27 0.221 0.0966 -- 0.183 -- -0.0733 1.84 -- -- -- --
154.91 0.583 3.27 0.215 0.0997 -- -- -- -0.0746 2.53 -- -- -- --
151.41 0.576 3.26 0.314 -- 0.343 -- -- -0.021 -- 19.5 4513 -- --
153.91 0.581 3.27 -- 0.0589 0.25 -- -- -0.0672 3.6 19.59 4512 -- --
155.5 0.583 3.27 0.219 -- -- -- -- -0.0721 -- -- -- -- --
156.13 0.584 3.27 -- 0.104 -- -- -- -0.0985 2.56 -- -- -- --
153.86 0.58 3.27 -- -- 0.281 -- -- -0.0631 -- 19.5 4513 -- --
156.76 0.584 3.27 -- -- -- -- -- -0.0964 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.17 atmosphere 1000.0 10 < th dose independent rect. 7 1
9 140.17 atmosphere 1000.0 10 < th dose dependent rect. 7 1
27 143.94 temperature 25.0 720 > th dose dependent rect. 4 1
32 144.79 temperature 25.0 720 > th dose independent rect. 24 6
34 144.85 temperature 25.0 720 > th dose independent rect. 4 1
49 145.50 temperature 25.0 720 > th dose independent rect. 1 2
57 145.69 temperature 25.0 720 < th dose independent rect. 24 5
63 145.93 humidity 80.0 30 > th dose independent rect. 2 1
64 145.93 atmosphere 1000.0 30 > th dose independent rect. 2 1
67 145.94 atmosphere 995.0 30 > th dose dependent rect. 2 1
68 145.96 humidity 90.0 90 < th dose dependent rect. 2 2
69 145.98 temperature 20.0 30 > th dose independent rect. 2 1
70 145.98 humidity 80.0 90 < th dose independent rect. 2 1
77 146.00 temperature 10.0 30 > th dose dependent rect. 2 1
78 146.00 humidity 90.0 10 < th dose dependent rect. 3 1
79 146.01 wind 9.0 30 < th dose independent rect. 2 1
80 146.01 temperature 10.0 30 > th dose independent rect. 2 1
82 146.01 temperature 30.0 30 < th dose independent rect. 2 1
83 146.01 humidity 50.0 30 > th dose independent rect. 2 1
87 146.01 atmosphere 1010.0 30 < th dose independent rect. 2 1
89 146.01 radiation 1.0 30 < th dose independent rect. 2 1
94 146.01 precipitation 0.1 30 < th dose independent rect. 2 1
95 146.01 temperature 10.0 30 > th dose independent rect. 3 23
96 146.01 radiation 1.0 30 < th dose dependent rect. 2 1
101 146.01 precipitation 0.1 30 < th dose dependent rect. 2 1
104 146.03 wind 5.0 30 < th dose independent rect. 2 1
106 146.03 humidity 90.0 10 < th dose independent rect. 3 1
107 146.03 humidity 50.0 30 > th dose dependent rect. 2 1
110 146.04 wind 9.0 30 < th dose dependent rect. 2 1
127 146.24 temperature 30.0 30 < th dose dependent rect. 2 1
134 146.31 temperature 25.0 720 < th dose independent rect. 3 1
135 146.31 atmosphere 1015.0 30 < th dose dependent rect. 2 1
146 146.55 wind 1.0 30 > th dose independent rect. 2 1
147 146.59 humidity 80.0 720 > th dose dependent rect. 11 1
148 146.65 atmosphere 1015.0 30 < th dose independent rect. 3 23
151 146.74 wind 9.0 30 < th dose independent rect. 3 23
162 146.83 humidity 80.0 90 < th dose independent rect. 24 5
210 147.52 atmosphere 1000.0 270 < th dose independent rect. 4 1
211 147.52 atmosphere 1000.0 270 < th dose dependent rect. 4 1
216 147.58 wind 1.0 1440 < th dose dependent rect. 9 1
284 148.24 humidity 80.0 30 > th dose dependent rect. 10 2
307 148.67 temperature 25.0 720 > th dose independent rect. 24 16
308 148.67 atmosphere 1000.0 1440 < th dose dependent rect. 4 1
309 148.68 atmosphere 1000.0 1440 < th dose dependent rect. 2 6
310 148.70 humidity 80.0 720 < th dose independent rect. 10 2
316 148.75 precipitation 0.1 720 < th dose independent rect. 10 9
319 148.75 precipitation 0.1 720 < th dose dependent rect. 10 9
332 148.83 atmosphere 1015.0 90 < th dose independent rect. 16 23
334 148.84 atmosphere 1000.0 1440 < th dose dependent rect. 7 1
340 148.86 temperature 10.0 10 > th dose dependent rect. 16 23
344 148.89 atmosphere 1015.0 10 < th dose independent rect. 16 23
380 149.11 temperature 30.0 10 < th dose dependent rect. 15 13
415 149.31 temperature 30.0 10 < th dose dependent rect. 15 19
417 149.32 wind 1.0 1440 < th dose independent rect. 9 3
418 149.32 temperature 25.0 720 < th dose independent rect. 24 16
422 149.35 radiation 30.0 1440 < th dose independent rect. 16 1
424 149.35 radiation 30.0 1440 < th dose independent rect. 16 12
427 149.38 atmosphere 1015.0 720 < th dose independent rect. 16 23
434 149.42 wind 1.0 1440 < th dose dependent rect. 9 3
439 149.43 temperature 20.0 10 < th dose dependent rect. 9 7
443 149.44 atmosphere 1015.0 270 < th dose independent rect. 16 13
450 149.47 wind 1.0 1440 < th dose independent rect. 9 1
453 149.48 wind 1.0 1440 > th dose independent rect. 9 2
468 149.55 atmosphere 1010.0 10 > th dose independent rect. 23 12
508 149.58 atmosphere 1000.0 270 < th dose dependent rect. 3 13
513 149.60 wind 1.0 43200 > th dose independent rect. 24 2
514 149.60 humidity 80.0 10 > th dose independent rect. 10 2
531 149.61 temperature 25.0 720 > th dose independent sin 6 NA
538 149.63 atmosphere 1010.0 10 < th dose independent rect. 17 13
540 149.64 humidity 90.0 90 < th dose independent rect. 2 14
562 149.72 wind 7.0 10 < th dose independent rect. 15 1
572 149.75 atmosphere 1015.0 720 < th dose independent rect. 17 11
586 149.79 precipitation 0.1 720 > th dose independent rect. 5 13
592 149.82 humidity 80.0 720 > th dose independent rect. 11 1
593 149.83 atmosphere 1015.0 43200 > th dose independent rect. 9 1
594 149.83 atmosphere 1015.0 43200 < th dose independent rect. 9 1
598 149.84 atmosphere 1015.0 720 < th dose independent rect. 7 15
599 149.85 humidity 90.0 270 < th dose independent rect. 22 1
603 149.85 temperature 20.0 30 > th dose independent rect. 16 23
605 149.86 wind 1.0 43200 < th dose independent rect. 24 2
608 149.86 atmosphere 1015.0 720 < th dose independent rect. 10 18
624 149.87 wind 3.0 43200 < th dose dependent rect. 24 3
627 149.89 atmosphere 1000.0 1440 > th dose independent rect. 3 2
628 149.89 atmosphere 1015.0 43200 > th dose independent rect. 8 4
639 149.90 precipitation 0.1 720 > th dose independent rect. 13 5
640 149.90 precipitation 0.1 720 > th dose independent rect. 10 8
647 149.91 temperature 20.0 10 < th dose dependent rect. 3 1
653 149.92 atmosphere 1000.0 1440 < th dose dependent sin 7 NA
674 149.96 atmosphere 1015.0 270 < th dose independent rect. 24 23
679 149.97 precipitation 0.1 720 > th dose independent rect. 7 11
681 149.97 atmosphere 1015.0 720 < th dose independent rect. 17 20
684 149.98 radiation 30.0 1440 < th dose independent rect. 16 10
691 149.98 temperature 30.0 10 < th dose dependent rect. 12 22
700 149.99 wind 5.0 43200 < th dose dependent rect. 13 17
702 150.00 temperature 20.0 30 < th dose independent rect. 23 1
711 150.01 wind 9.0 14400 < th dose independent rect. 24 4
717 150.01 precipitation 0.1 720 > th dose dependent rect. 5 13
739 150.04 atmosphere 1015.0 43200 > th dose independent rect. 11 1
742 150.04 precipitation 0.1 720 > th dose independent rect. 16 4
761 150.06 atmosphere 1015.0 43200 < th dose independent rect. 11 1
766 150.06 atmosphere 1015.0 43200 > th dose independent rect. 1 11
769 150.06 wind 7.0 43200 < th dose dependent rect. 14 13
778 150.07 precipitation 0.1 90 < th dose independent rect. 16 23
782 150.07 precipitation 0.1 90 < th dose dependent rect. 16 23
790 150.08 wind 5.0 43200 < th dose dependent sin 15 NA
809 150.10 atmosphere 1015.0 43200 < th dose independent rect. 1 1
813 150.10 atmosphere 1000.0 1440 < th dose independent rect. 2 3
814 150.10 atmosphere 1000.0 1440 < th dose independent rect. 1 5
822 150.10 atmosphere 1015.0 43200 < th dose independent rect. 1 11
831 150.10 temperature 20.0 10 < th dose dependent rect. 23 5
841 150.11 atmosphere 1015.0 43200 > th dose independent rect. 1 3
845 150.11 atmosphere 1015.0 43200 > th dose independent rect. 1 5
886 150.12 wind 1.0 43200 > th dose dependent rect. 14 13
894 150.13 atmosphere 1015.0 43200 > th dose independent rect. 2 1
913 150.13 precipitation 0.1 720 > th dose dependent rect. 10 9
920 150.13 wind 1.0 43200 < th dose dependent rect. 5 21
928 150.14 temperature 25.0 10 > th dose independent rect. 7 10
936 150.14 atmosphere 1015.0 720 < th dose independent rect. 7 22
941 150.14 precipitation 0.1 720 > th dose dependent rect. 13 6
952 150.15 radiation 30.0 10 < th dose independent rect. 14 2
963 150.15 wind 1.0 90 > th dose independent rect. 2 14
966 150.15 atmosphere 1015.0 10 < th dose independent rect. 1 23
983 150.16 atmosphere 1015.0 43200 < th dose independent rect. 1 5