Os02g0528900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDR9 ABC transporter.
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Os02g0528900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDR9 ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 370.06 | 0.904 | 5.57 | -0.125 | 1 | -1.51 | 1.04 | -9.09 | -2.48 | 10.2 | 46.35 | 3085 | -- | -- |
| 437.93 | 0.975 | 5.57 | 0.472 | 0.946 | -1.19 | 1 | -- | -2.31 | 10.1 | 30 | 2703 | -- | -- |
| 371.89 | 0.898 | 5.59 | -0.177 | 0.995 | -1.52 | -- | -9.38 | -2.5 | 10.2 | 46.81 | 2850 | -- | -- |
| 434.86 | 0.971 | 5.57 | 0.598 | 1.04 | -1.34 | -- | -- | -2.27 | 11.3 | 40 | 1949 | -- | -- |
| 431.16 | 0.967 | 5.62 | -0.235 | -- | -1.63 | -- | -9.57 | -2.5 | -- | 45.94 | 2844 | -- | -- |
| 479.56 | 1.03 | 5.6 | 0.422 | 1.12 | -- | 0.755 | -- | -2.47 | 10.6 | -- | -- | -- | -- |
| 481.92 | 1.03 | 5.6 | 0.453 | 1.12 | -- | -- | -- | -2.47 | 10.6 | -- | -- | -- | -- |
| 491.1 | 1.03 | 5.58 | 0.444 | -- | -1.87 | -- | -- | -2.26 | -- | 40 | 2607 | -- | -- |
| 441.17 | 0.978 | 5.58 | -- | 1.1 | -1.5 | -- | -- | -2.36 | 11.5 | 41.8 | 1929 | -- | -- |
| 559.18 | 1.1 | 5.63 | 0.432 | -- | -- | -- | -- | -2.48 | -- | -- | -- | -- | -- |
| 487.33 | 1.03 | 5.61 | -- | 1.12 | -- | -- | -- | -2.52 | 10.6 | -- | -- | -- | -- |
| 497.78 | 1.04 | 5.59 | -- | -- | -1.78 | -- | -- | -2.32 | -- | 39.69 | 2603 | -- | -- |
| 564.11 | 1.11 | 5.64 | -- | -- | -- | -- | -- | -2.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 358.85 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 2 | 359.69 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 9 |
| 4 | 359.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 5 | 359.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 6 | 359.96 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 30 | 360.44 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 41 | 360.97 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 43 | 361.05 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 46 | 361.08 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 52 | 361.12 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 56 | 361.13 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 58 | 361.14 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 66 | 361.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 75 | 361.46 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 83 | 361.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 126 | 362.37 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 153 | 362.71 | humidity | 90.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 194 | 363.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 214 | 363.20 | humidity | 90.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 233 | 363.49 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 243 | 363.60 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 280 | 364.17 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 288 | 364.26 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 292 | 364.40 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 318 | 364.77 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 319 | 364.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 347 | 365.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 349 | 365.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 365 | 365.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 370 | 365.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 371 | 365.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 411 | 365.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 420 | 366.01 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 423 | 366.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 425 | 366.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 429 | 366.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 470 | 366.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 496 | 366.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 505 | 366.49 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 508 | 366.52 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 538 | 366.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 541 | 366.71 | radiation | 40.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 552 | 366.77 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 557 | 366.81 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 559 | 366.83 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 565 | 366.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 579 | 367.00 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 591 | 367.06 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 597 | 367.11 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 736 | 367.56 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 741 | 367.57 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 804 | 367.85 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 815 | 367.91 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 840 | 368.05 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 847 | 368.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 848 | 368.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 850 | 368.11 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 9 |
| 875 | 368.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 884 | 368.28 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 901 | 368.39 | wind | 7.0 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 911 | 368.43 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |