Os02g0528200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Branching enzyme-3 precursor (EC 2.4.1.18).
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Os02g0528200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Branching enzyme-3 precursor (EC 2.4.1.18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.78 | 0.372 | 8.56 | 1.58 | 0.711 | 2.22 | -0.502 | -1.69 | -0.111 | 9.86 | 31.1 | 263 | -- | -- |
| 65.54 | 0.377 | 8.59 | 1.3 | 0.747 | 2.2 | -0.408 | -- | -0.143 | 9.96 | 30.29 | 230 | -- | -- |
| 63.73 | 0.372 | 8.56 | 1.54 | 0.712 | 2.19 | -- | -1.66 | -0.117 | 9.75 | 31.05 | 266 | -- | -- |
| 66.13 | 0.379 | 8.59 | 1.27 | 0.763 | 2.15 | -- | -- | -0.171 | 9.86 | 30.25 | 235 | -- | -- |
| 77.68 | 0.41 | 8.55 | 1.74 | -- | 2.57 | -- | -2.1 | -0.047 | -- | 31.71 | 509 | -- | -- |
| 126.11 | 0.526 | 8.67 | 0.74 | 1.06 | -- | -0.239 | -- | -0.588 | 7.27 | -- | -- | -- | -- |
| 126.27 | 0.526 | 8.67 | 0.735 | 1.06 | -- | -- | -- | -0.588 | 7.26 | -- | -- | -- | -- |
| 81.5 | 0.42 | 8.6 | 1.36 | -- | 2.53 | -- | -- | -0.126 | -- | 31.1 | 490 | -- | -- |
| 105.42 | 0.478 | 8.65 | -- | 0.897 | 1.81 | -- | -- | -0.455 | 9.12 | 36.94 | 129 | -- | -- |
| 186.13 | 0.637 | 8.7 | 0.754 | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
| 140.49 | 0.554 | 8.69 | -- | 1.07 | -- | -- | -- | -0.669 | 7.21 | -- | -- | -- | -- |
| 125.69 | 0.522 | 8.65 | -- | -- | 2.08 | -- | -- | -0.364 | -- | 31.84 | 466 | -- | -- |
| 201.1 | 0.662 | 8.72 | -- | -- | -- | -- | -- | -0.653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 61.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 4 | 61.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 14 | 62.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 18 | 63.21 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 19 | 63.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 28 | 64.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 29 | 64.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 50 | 64.36 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 64 | 64.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 73 | 64.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 83 | 64.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 84 | 64.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 185 | 65.01 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 191 | 65.03 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 216 | 65.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 263 | 65.26 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 17 |
| 353 | 65.46 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 441 | 65.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 563 | 65.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 698 | 65.81 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 808 | 65.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |