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Os02g0527600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MAP kinase kinase kinase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.31 (0.038) R2 : 0.69
β1 : -1.24 (0.139) R2dD : 0.0576 R2D : 0.0331
β2 : 2.96 (0.11) R2dC : 0.685 R2C : -0.0683
β3 : 3.44 (0.126) R2dE : 0.712 R2E : -0.0548
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.428 (0.0812) R2dN8 : 0.0242 R2N8 : -0.0088
σ : 0.71
deviance : 232.33
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C
peak time of C : 9.41
E
wheather : humidity
threshold : 52.7
memory length : 685
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 3.75

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.12 0.717 9.3 -1.23 2.97 3.36 -0.0929 0.538 -0.404 9.24 51.3 698 17.1 4.23
233.05 0.711 9.3 -1.23 3 3.45 -0.111 -- -0.377 9.36 52.24 682 17.3 4.18
232.7 0.71 9.3 -1.24 2.97 3.37 -- 0.558 -0.402 9.27 51.81 690 17.2 4.2
232.33 0.71 9.31 -1.24 2.96 3.44 -- -- -0.428 9.41 52.7 685 17.6 3.75
354.31 0.877 9.4 -1.31 -- 3.37 -- 0.161 -0.26 -- 42.69 2356 19.4 3.85
332.67 0.855 9.32 -1.16 2.72 -- -0.502 -- -0.355 5.74 -- -- -- --
333.29 0.855 9.32 -1.17 2.72 -- -- -- -0.353 5.73 -- -- -- --
282.27 0.782 9.41 -1.35 -- 4.38 -- -- -0.186 -- 34.82 2297 17.2 10.2
273.6 0.77 9.27 -- 2.96 3.38 -- -- -0.29 9.37 52 685 17.5 3.88
716.85 1.25 9.36 -1.08 -- -- -- -- -0.288 -- -- -- -- --
369.15 0.899 9.29 -- 2.7 -- -- -- -0.223 5.75 -- -- -- --
330.27 0.846 9.29 -- -- 4.26 -- -- 0.00897 -- 34.26 2294 16.7 10.7
747.68 1.28 9.33 -- -- -- -- -- -0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.28 humidity 50.0 720 > th dose dependent rect. 17 4
11 240.83 humidity 50.0 720 > th dose dependent rect. 15 15
17 242.80 humidity 70.0 720 > th dose dependent rect. 19 1
24 244.40 humidity 50.0 720 > th dose dependent rect. 10 20
41 246.81 humidity 60.0 720 > th dose dependent rect. 10 12
49 247.17 humidity 90.0 720 < th dose dependent rect. 15 9
60 247.86 humidity 80.0 720 > th dose independent rect. 10 12
66 248.05 humidity 80.0 720 > th dose independent rect. 15 6
88 249.03 humidity 60.0 720 > th dose dependent sin 18 NA
89 249.04 humidity 70.0 720 > th dose independent rect. 15 15
108 249.42 temperature 30.0 720 < th dose independent rect. 17 4
135 250.26 humidity 80.0 720 < th dose dependent sin 13 NA
136 250.27 humidity 80.0 720 < th dose dependent rect. 15 13
159 250.89 humidity 80.0 720 < th dose dependent rect. 15 18
187 251.23 humidity 60.0 720 > th dose dependent sin 14 NA
319 253.05 temperature 30.0 14400 < th dose independent rect. 11 2
346 253.24 temperature 30.0 14400 > th dose independent rect. 11 2
359 253.35 humidity 90.0 1440 < th dose dependent rect. 19 1
425 253.95 radiation 1.0 720 < th dose dependent rect. 20 23
430 254.06 humidity 60.0 720 > th dose dependent rect. 5 17
447 254.22 humidity 70.0 720 > th dose independent rect. 18 11
454 254.28 temperature 30.0 720 < th dose independent rect. 17 13
462 254.33 humidity 70.0 720 < th dose independent rect. 14 6
490 254.49 humidity 70.0 720 > th dose independent sin 13 NA
497 254.57 humidity 80.0 720 > th dose independent sin 20 NA
505 254.63 temperature 30.0 14400 > th dose dependent rect. 14 4
511 254.67 radiation 1.0 720 < th dose dependent rect. 7 23
551 254.85 temperature 30.0 14400 > th dose dependent rect. 14 2
570 255.02 temperature 30.0 14400 < th dose independent rect. 11 13
573 255.03 temperature 30.0 14400 < th dose independent rect. 11 8
576 255.03 temperature 30.0 14400 < th dose independent rect. 11 16
577 255.03 temperature 30.0 14400 < th dose independent rect. 11 19
608 255.10 temperature 30.0 14400 > th dose dependent sin 13 NA
610 255.12 temperature 30.0 14400 > th dose independent rect. 11 8
630 255.18 radiation 1.0 720 < th dose independent sin 13 NA
670 255.24 radiation 1.0 720 < th dose independent rect. 7 23
689 255.35 humidity 80.0 720 > th dose independent rect. 5 17
735 255.51 radiation 1.0 720 < th dose dependent rect. 12 21
738 255.53 humidity 70.0 1440 > th dose independent rect. 12 15
753 255.57 precipitation 0.1 43200 < th dose independent rect. 19 2
755 255.57 precipitation 0.1 43200 < th dose dependent rect. 19 2
764 255.61 humidity 70.0 720 > th dose independent sin 15 NA
767 255.61 radiation 1.0 720 < th dose dependent no NA NA
803 255.67 temperature 30.0 14400 < th dose independent sin 17 NA
821 255.69 humidity 70.0 1440 < th dose independent rect. 12 8
853 255.75 temperature 30.0 14400 > th dose independent sin 17 NA
898 255.83 temperature 30.0 14400 < th dose independent rect. 16 8
900 255.84 temperature 30.0 14400 < th dose independent rect. 15 22
903 255.85 temperature 30.0 14400 < th dose independent rect. 16 14
906 255.86 temperature 30.0 14400 < th dose independent rect. 16 3
908 255.86 temperature 30.0 14400 < th dose independent rect. 16 11
917 255.87 humidity 80.0 1440 < th dose independent rect. 7 14
925 255.89 temperature 30.0 14400 < th dose independent rect. 17 1
928 255.89 radiation 1.0 720 > th dose independent rect. 7 23
932 255.91 temperature 30.0 14400 < th dose independent rect. 17 22
938 255.93 radiation 1.0 720 < th dose dependent sin 13 NA
946 255.95 temperature 30.0 14400 > th dose independent rect. 16 3
965 255.96 humidity 80.0 720 > th dose independent rect. 19 1