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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0527500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF642 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0275) R2 : 0.00357
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0741 (0.058) R2dN8 : 0.00461 R2N8 : 0.00357
σ : 0.518
deviance : 123.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.43 0.507 3.03 -0.526 0.0733 0.97 -0.127 -8.15 0.0867 1.99 30.71 23 -- --
122.47 0.519 2.98 -0.0223 0.0762 0.175 -0.0469 -- 0.0842 2.68 30.71 23 -- --
116.45 0.506 3.03 -0.504 0.0738 0.974 -- -8.12 0.0876 1.99 30.71 23 -- --
122.48 0.519 2.98 -0.0213 0.0766 0.178 -- -- 0.0846 2.72 30.73 20 -- --
116.76 0.506 3.03 -0.498 -- 0.945 -- -8.12 0.0872 -- 30.7 21 -- --
123.21 0.52 2.98 -0.00828 0.0439 -- -0.0966 -- 0.0721 2.25 -- -- -- --
123.25 0.52 2.98 -0.00554 0.0436 -- -- -- 0.0727 2.07 -- -- -- --
122.79 0.518 2.98 -0.0156 -- 0.146 -- -- 0.0843 -- 30.7 21 -- --
122.49 0.518 2.98 -- 0.0758 0.176 -- -- 0.0868 2.71 30.7 20 -- --
123.36 0.519 2.98 -0.00372 -- -- -- -- 0.0737 -- -- -- -- --
123.25 0.519 2.98 -- 0.0435 -- -- -- 0.0733 2.06 -- -- -- --
122.8 0.518 2.98 -- -- 0.145 -- -- 0.0859 -- 30.7 21 -- --
123.36 0.518 2.98 -- -- -- -- -- 0.0741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.55 temperature 30.0 90 > th dose independent rect. 11 1
2 115.58 temperature 30.0 10 > th dose independent rect. 11 1
6 115.88 temperature 30.0 10 > th dose dependent rect. 11 1
58 116.39 temperature 25.0 10 > th dose independent rect. 22 2
139 117.34 temperature 30.0 10 > th dose dependent sin 8 NA
148 117.64 temperature 30.0 30 > th dose independent sin 7 NA
196 118.00 temperature 25.0 270 > th dose independent rect. 1 1
268 118.42 temperature 30.0 30 < th dose independent rect. 3 23
292 118.59 humidity 90.0 10 < th dose independent rect. 22 2
294 118.60 temperature 25.0 90 > th dose independent rect. 1 4
302 118.72 temperature 30.0 30 < th dose independent sin 8 NA
303 118.72 temperature 20.0 30 > th dose dependent rect. 2 1
305 118.76 temperature 20.0 30 > th dose independent rect. 2 1
306 118.76 wind 3.0 30 < th dose dependent rect. 2 1
309 118.76 atmosphere 1005.0 30 > th dose dependent rect. 2 1
313 118.77 wind 3.0 30 < th dose independent rect. 2 1
314 118.77 atmosphere 1005.0 30 > th dose independent rect. 2 1
323 118.81 humidity 80.0 30 > th dose independent rect. 2 1
326 118.82 temperature 10.0 30 > th dose independent rect. 2 1
328 118.82 temperature 30.0 30 < th dose independent rect. 2 1
329 118.82 humidity 50.0 30 > th dose independent rect. 2 1
333 118.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
335 118.82 radiation 1.0 30 < th dose independent rect. 2 1
340 118.82 precipitation 0.1 30 < th dose independent rect. 2 1
341 118.82 temperature 10.0 30 > th dose independent rect. 3 23
342 118.82 humidity 50.0 30 > th dose dependent rect. 2 1
344 118.82 radiation 1.0 30 < th dose dependent rect. 2 1
349 118.82 radiation 30.0 10 < th dose dependent rect. 12 1
350 118.82 precipitation 0.1 30 < th dose dependent rect. 2 1
354 118.85 temperature 25.0 30 > th dose independent rect. 20 4
379 118.89 humidity 90.0 720 < th dose independent rect. 4 1
380 118.89 temperature 30.0 30 < th dose independent rect. 5 23
394 118.95 atmosphere 1015.0 30 < th dose dependent rect. 2 1
412 118.97 humidity 90.0 720 < th dose independent rect. 2 3
419 119.03 temperature 25.0 270 > th dose dependent rect. 1 1
429 119.08 temperature 30.0 30 < th dose dependent rect. 2 1
460 119.20 wind 1.0 30 > th dose independent rect. 2 1
486 119.34 temperature 25.0 30 > th dose independent rect. 4 1
496 119.41 humidity 90.0 720 < th dose dependent rect. 4 1
514 119.44 humidity 90.0 10 < th dose independent rect. 4 1
522 119.48 radiation 20.0 10 < th dose independent rect. 12 1
526 119.49 temperature 25.0 90 > th dose dependent rect. 4 1
571 119.54 radiation 40.0 30 < th dose independent rect. 11 13
580 119.55 humidity 90.0 30 < th dose independent rect. 20 4
588 119.57 wind 1.0 30 > th dose dependent rect. 4 1
591 119.58 temperature 30.0 30 < th dose independent rect. 21 23
594 119.59 wind 1.0 30 > th dose independent rect. 4 1
642 119.66 temperature 20.0 90 > th dose dependent rect. 22 1
651 119.69 humidity 90.0 4320 < th dose independent rect. 5 1
746 119.79 temperature 20.0 10 > th dose dependent rect. 22 2
754 119.82 temperature 25.0 270 > th dose independent rect. 18 11
791 119.84 temperature 25.0 270 < th dose independent rect. 20 12
819 119.91 humidity 90.0 4320 > th dose independent rect. 4 2
823 119.92 temperature 30.0 30 > th dose independent no NA NA
936 119.93 temperature 30.0 10 > th dose dependent no NA NA