Os02g0526500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sterile alpha motif homology domain containing protein.
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Os02g0526500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sterile alpha motif homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.34 | 0.337 | 11.4 | -1 | 0.308 | -0.567 | -0.0444 | 0.863 | -0.0878 | 1.21 | 25.7 | 266 | -- | -- |
| 52.19 | 0.336 | 11.4 | -0.859 | 0.315 | -0.642 | 0.0868 | -- | -0.0475 | 0.898 | 24.79 | 232 | -- | -- |
| 51.34 | 0.334 | 11.4 | -0.999 | 0.306 | -0.566 | -- | 0.848 | -0.0868 | 1.21 | 25.7 | 273 | -- | -- |
| 52.22 | 0.337 | 11.4 | -0.859 | 0.314 | -0.641 | -- | -- | -0.0458 | 0.887 | 24.75 | 232 | -- | -- |
| 55.05 | 0.346 | 11.4 | -1.03 | -- | -0.524 | -- | 0.987 | -0.0829 | -- | 25.7 | 581 | -- | -- |
| 58.16 | 0.358 | 11.4 | -0.692 | 0.248 | -- | 0.0708 | -- | 0.0777 | 0.112 | -- | -- | -- | -- |
| 58.19 | 0.357 | 11.4 | -0.695 | 0.248 | -- | -- | -- | 0.0775 | 0.0717 | -- | -- | -- | -- |
| 56.03 | 0.349 | 11.4 | -0.857 | -- | -0.673 | -- | -- | -0.028 | -- | 23.3 | 556 | -- | -- |
| 69.28 | 0.39 | 11.4 | -- | 0.289 | -0.347 | -- | -- | 0.117 | 0.0589 | 23.1 | 161 | -- | -- |
| 62.06 | 0.368 | 11.4 | -0.687 | -- | -- | -- | -- | 0.081 | -- | -- | -- | -- | -- |
| 70.91 | 0.394 | 11.4 | -- | 0.239 | -- | -- | -- | 0.155 | 23.9 | -- | -- | -- | -- |
| 73.2 | 0.398 | 11.4 | -- | -- | -0.295 | -- | -- | 0.117 | -- | 23.45 | 521 | -- | -- |
| 74.51 | 0.403 | 11.4 | -- | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.27 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 49.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 3 | 49.50 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 4 | 49.51 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 7 | 49.56 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 13 | 49.60 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 14 | 49.60 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 32 | 49.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 34 | 49.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 36 | 49.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 37 | 49.73 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 40 | 49.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 41 | 49.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 42 | 49.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 45 | 49.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 46 | 49.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 60 | 49.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 63 | 49.81 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 64 | 49.81 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 65 | 49.81 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 66 | 49.81 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 71 | 49.82 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 82 | 49.83 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 99 | 49.85 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 102 | 49.86 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 117 | 49.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 129 | 49.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 130 | 49.88 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 181 | 49.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 213 | 49.93 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 265 | 49.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 311 | 49.98 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 313 | 49.99 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 339 | 50.01 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 352 | 50.02 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 355 | 50.02 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 373 | 50.03 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 374 | 50.03 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 389 | 50.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 404 | 50.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 445 | 50.07 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 493 | 50.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 526 | 50.10 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 545 | 50.11 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 594 | 50.12 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 604 | 50.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 686 | 50.16 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 698 | 50.16 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 17 |
| 867 | 50.21 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 871 | 50.21 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 929 | 50.22 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 977 | 50.23 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 978 | 50.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 4 |