Os02g0526400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent Clp protease ATP-binding subunit.
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Os02g0526400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent Clp protease ATP-binding subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 283.51 | 0.791 | 10.2 | 2.31 | 1.36 | -1.82 | -0.893 | 0.356 | 1.16 | 23 | 25.8 | 1396 | -- | -- |
| 283.67 | 0.784 | 10.2 | 2.22 | 1.36 | -1.8 | -0.88 | -- | 1.14 | 23 | 25.8 | 1392 | -- | -- |
| 286.84 | 0.789 | 10.2 | 2.34 | 1.36 | -1.83 | -- | 0.288 | 1.16 | 23 | 25.8 | 1385 | -- | -- |
| 286.81 | 0.789 | 10.2 | 2.25 | 1.38 | -1.83 | -- | -- | 1.14 | 23 | 25.8 | 1376 | -- | -- |
| 396.49 | 0.927 | 10.2 | 2.36 | -- | -1.73 | -- | 0.394 | 1.14 | -- | 25.9 | 1524 | -- | -- |
| 383.62 | 0.918 | 10.3 | 1.58 | 1.25 | -- | -0.978 | -- | 0.543 | 22.6 | -- | -- | -- | -- |
| 387.57 | 0.922 | 10.3 | 1.62 | 1.26 | -- | -- | -- | 0.546 | 22.6 | -- | -- | -- | -- |
| 396.2 | 0.927 | 10.2 | 2.24 | -- | -1.69 | -- | -- | 1.09 | -- | 25.86 | 1524 | -- | -- |
| 406.95 | 0.94 | 10.3 | -- | 1.38 | -1.27 | -- | -- | 0.702 | 23.1 | 25.9 | 1323 | -- | -- |
| 484.68 | 1.03 | 10.3 | 1.65 | -- | -- | -- | -- | 0.552 | -- | -- | -- | -- | -- |
| 456.98 | 1 | 10.4 | -- | 1.27 | -- | -- | -- | 0.366 | 22.7 | -- | -- | -- | -- |
| 493.74 | 1.04 | 10.3 | -- | -- | -0.77 | -- | -- | 0.57 | -- | 25.78 | 1505 | -- | -- |
| 556.14 | 1.1 | 10.3 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.53 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 2 | 279.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 279.88 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 4 | 280.10 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 5 | 280.31 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 6 | 280.57 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 8 | 280.63 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 9 | 280.64 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 10 | 280.65 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 37 | 281.99 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 48 | 282.26 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 71 | 282.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 80 | 282.76 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 84 | 282.83 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 85 | 282.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 112 | 283.19 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 147 | 283.55 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 162 | 283.69 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 172 | 283.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 211 | 284.16 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 249 | 284.45 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 290 | 284.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 295 | 284.83 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 312 | 284.91 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 20 |
| 316 | 284.92 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 18 |
| 368 | 285.19 | temperature | 25.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 439 | 285.47 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 440 | 285.47 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 8 |
| 502 | 285.67 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 503 | 285.67 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 523 | 285.73 | temperature | 25.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 536 | 285.77 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 540 | 285.78 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 16 |
| 573 | 285.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 579 | 285.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 621 | 285.90 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 633 | 285.92 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 691 | 286.02 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 705 | 286.06 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 731 | 286.12 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 741 | 286.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 830 | 286.31 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 834 | 286.32 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 848 | 286.35 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 856 | 286.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 878 | 286.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 884 | 286.41 | temperature | 20.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 965 | 286.54 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 2 |