Os02g0525900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2).
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Os02g0525900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.67 | 0.65 | 9.91 | -0.922 | 2.42 | -2.12 | 0.837 | -2.33 | -0.242 | 16.5 | 0.6101 | 310 | 1.68 | -- |
| 206.68 | 0.67 | 9.91 | -0.961 | 2.4 | -2.11 | 0.195 | -- | -0.235 | 16.6 | 0.6501 | 318 | 2.14 | -- |
| 193.12 | 0.647 | 9.91 | -0.915 | 2.39 | -2.07 | -- | -2.13 | -0.231 | 16.6 | 0.72 | 311 | 2.05 | -- |
| 206.64 | 0.67 | 9.91 | -0.966 | 2.39 | -2.1 | -- | -- | -0.234 | 16.5 | 0.65 | 321 | 2.29 | -- |
| 244.61 | 0.728 | 9.88 | -1.02 | -- | -2.68 | -- | -1.65 | -0.249 | -- | -17.26 | 476 | 2.75 | -- |
| 244.61 | 0.733 | 9.95 | -0.97 | 2.68 | -- | 1.68 | -- | -0.246 | 19.2 | -- | -- | -- | -- |
| 251.97 | 0.743 | 9.95 | -1 | 2.69 | -- | -- | -- | -0.242 | 19.1 | -- | -- | -- | -- |
| 251.97 | 0.739 | 9.88 | -1 | -- | -2.69 | -- | -- | -0.242 | -- | -17.15 | 475 | 2.82 | -- |
| 231.09 | 0.708 | 9.89 | -- | 2.39 | -2.09 | -- | -- | -0.137 | 16.5 | 0.6506 | 322 | 2.35 | -- |
| 634.42 | 1.18 | 9.89 | -1.05 | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
| 278.48 | 0.781 | 9.92 | -- | 2.7 | -- | -- | -- | -0.13 | 19.1 | -- | -- | -- | -- |
| 278.48 | 0.777 | 9.85 | -- | -- | -2.7 | -- | -- | -0.13 | -- | -30.22 | 504 | 3.09 | -- |
| 663.7 | 1.2 | 9.86 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.39 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 5 | 184.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 17 |
| 6 | 184.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 10 | 185.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 12 | 185.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 14 | 186.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 15 | 186.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 18 |
| 30 | 188.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 11 |
| 31 | 188.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 33 | 188.46 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 34 | 188.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 36 | 188.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 37 | 188.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 43 | 188.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 16 |
| 44 | 188.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 45 | 188.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 46 | 188.89 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 7 |
| 47 | 188.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 48 | 188.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 51 | 189.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 60 | 189.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 61 | 189.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 71 | 189.92 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 75 | 190.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 79 | 190.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 82 | 190.27 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 83 | 190.29 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 24 | 18 |
| 87 | 190.37 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 98 | 190.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 6 |
| 99 | 190.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 114 | 190.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 115 | 190.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 116 | 190.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 119 | 190.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 124 | 190.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 125 | 190.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 132 | 190.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 153 | 191.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 158 | 191.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 162 | 191.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 167 | 191.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 8 |
| 168 | 191.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 176 | 191.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 179 | 191.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 181 | 191.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 4 |
| 184 | 191.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 4 |
| 206 | 192.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 207 | 192.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 209 | 192.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 218 | 192.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 223 | 192.47 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 4 |
| 225 | 192.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 231 | 192.71 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 236 | 192.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 237 | 192.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 259 | 192.93 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 6 |
| 260 | 192.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 261 | 192.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 262 | 192.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 263 | 192.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 269 | 193.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 271 | 193.11 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 20 |
| 273 | 193.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 278 | 193.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 4 |
| 288 | 193.43 | radiation | 1.0 | 270 | > th | dose independent | sin | 7 | NA |
| 306 | 193.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 314 | 193.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 16 |
| 317 | 193.59 | radiation | 1.0 | 270 | < th | dose independent | sin | 7 | NA |
| 321 | 193.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 4 |
| 322 | 193.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 4 |
| 328 | 193.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 20 |
| 334 | 193.73 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 8 |
| 366 | 194.17 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 367 | 194.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 383 | 194.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 4 |
| 396 | 194.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 4 |
| 400 | 194.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 20 |
| 401 | 194.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 413 | 194.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 8 |
| 414 | 194.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 418 | 194.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 426 | 194.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 437 | 194.99 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 19 |
| 441 | 195.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 457 | 195.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 18 |
| 458 | 195.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 464 | 195.37 | radiation | 1.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 492 | 195.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 528 | 195.79 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 7 |
| 545 | 195.99 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 588 | 196.24 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 596 | 196.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 597 | 196.29 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 616 | 196.41 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 8 |
| 663 | 196.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 675 | 196.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 21 |
| 676 | 196.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 680 | 196.95 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 685 | 196.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 701 | 197.10 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 735 | 197.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 20 |
| 736 | 197.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 739 | 197.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 742 | 197.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 746 | 197.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 748 | 197.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 749 | 197.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 769 | 197.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 793 | 197.53 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 820 | 197.65 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 898 | 198.21 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 918 | 198.33 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 2 |
| 945 | 198.50 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 985 | 198.55 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 10 |