Os02g0525100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0525100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.96 | 0.581 | 9.9 | -2.17 | 0.556 | -1.33 | 1.92 | 2.51 | 0.288 | 17.9 | 19.5 | 889 | -- | -- |
| 165.05 | 0.598 | 9.85 | -1.85 | 0.451 | -1.75 | 2.16 | -- | 0.333 | 16.8 | 19.36 | 893 | -- | -- |
| 160.79 | 0.591 | 9.91 | -2.26 | 0.615 | -1.24 | -- | 2.7 | 0.267 | 18.5 | 19.7 | 1050 | -- | -- |
| 174.13 | 0.615 | 9.85 | -1.94 | 0.543 | -1.83 | -- | -- | 0.343 | 18 | 19.5 | 957 | -- | -- |
| 178.11 | 0.622 | 9.89 | -2.22 | -- | -1.38 | -- | 2.55 | 0.267 | -- | 19.3 | 893 | -- | -- |
| 230.25 | 0.711 | 9.77 | -1.19 | 0.602 | -- | 1.71 | -- | 0.667 | 18.1 | -- | -- | -- | -- |
| 234.47 | 0.717 | 9.77 | -1.21 | 0.647 | -- | -- | -- | 0.671 | 19.4 | -- | -- | -- | -- |
| 189.85 | 0.642 | 9.83 | -1.85 | -- | -1.8 | -- | -- | 0.357 | -- | 19.33 | 747 | -- | -- |
| 250.26 | 0.737 | 9.78 | -- | 0.574 | -0.887 | -- | -- | 0.674 | 18.7 | 20.2 | 731 | -- | -- |
| 256.74 | 0.749 | 9.76 | -1.22 | -- | -- | -- | -- | 0.66 | -- | -- | -- | -- | -- |
| 272.96 | 0.773 | 9.74 | -- | 0.658 | -- | -- | -- | 0.805 | 19.3 | -- | -- | -- | -- |
| 265.61 | 0.759 | 9.77 | -- | -- | -0.918 | -- | -- | 0.625 | -- | 20.63 | 513 | -- | -- |
| 295.94 | 0.803 | 9.73 | -- | -- | -- | -- | -- | 0.795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.63 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 17 |
| 42 | 155.60 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 50 | 156.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 59 | 156.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 62 | 156.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 67 | 156.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 69 | 156.66 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 22 |
| 89 | 157.22 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 102 | 157.51 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 137 | 157.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 173 | 158.31 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 174 | 158.32 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 201 | 158.58 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 204 | 158.64 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 205 | 158.64 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 218 | 158.73 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 285 | 159.42 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 288 | 159.44 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 300 | 159.58 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 388 | 160.48 | temperature | 20 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 411 | 160.71 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 23 |
| 467 | 161.23 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 640 | 162.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 693 | 162.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 728 | 163.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 753 | 163.41 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 764 | 163.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 767 | 163.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 768 | 163.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 922 | 164.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 957 | 164.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 999 | 165.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |