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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0521800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0416) R2 : 0.222
β1 : -0.633 (0.175) R2dD : 0.042 R2D : -0.135
β2 : -- (--) R2dC : -- R2C : --
β3 : 22.8 (2.52) R2dE : 7.92 R2E : -6.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -111 (13.6) R2dD*E : 6.44 R2D*E : -7.65
γ1 : 0.0771 (0.0758) R2dN8 : 0.00237 R2N8 : -0.0562
σ : 0.667
deviance : 203.14
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.13 0.662 3.23 -0.637 0.0577 22.8 -0.571 -111 0.0729 4.77 1000 10 23 1
231.66 0.714 3.05 0.313 0.057 2.5 -0.584 -- 0.0716 4.58 1000 10 23 1
202.98 0.669 3.22 -0.635 0.0561 22.8 -- -111 0.0757 5.6 1000 10 23 1
232.56 0.715 3.05 0.317 0.0563 2.49 -- -- 0.0746 5.6 1001 27 23 2.54
203.14 0.667 3.22 -0.633 -- 22.8 -- -111 0.0771 -- 1000 10 23 1
256.26 0.75 3.05 0.373 0.0865 -- -0.477 -- 0.05 4.66 -- -- -- --
256.61 0.75 3.05 0.374 0.102 -- -- -- 0.0523 2.05 -- -- -- --
232.72 0.714 3.05 0.319 -- 2.49 -- -- 0.076 -- 1001 28 22.9 2.56
235.19 0.718 3.06 -- 0.0613 2.54 -- -- 0.0399 5.47 1001 27 23 2.54
257.23 0.749 3.05 0.378 -- -- -- -- 0.0547 -- -- -- -- --
260.3 0.755 3.06 -- 0.109 -- -- -- 0.0106 2.13 -- -- -- --
235.39 0.717 3.06 -- -- 2.55 -- -- 0.0412 -- 1001 28 22.9 2.56
261.01 0.754 3.06 -- -- -- -- -- 0.0127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.13 atmosphere 1000.0 10 < th dose independent rect. 23 1
23 223.88 atmosphere 1000.0 10 < th dose dependent rect. 24 1
43 226.36 atmosphere 1000.0 90 < th dose dependent rect. 13 3
48 227.89 atmosphere 1000.0 90 < th dose independent rect. 12 12
53 228.50 humidity 50.0 270 < th dose independent rect. 13 1
54 228.50 humidity 50.0 270 < th dose dependent rect. 13 1
57 228.55 atmosphere 1000.0 270 < th dose dependent rect. 12 1
59 228.56 atmosphere 1000.0 270 < th dose independent rect. 12 1
61 228.72 atmosphere 1000.0 10 < th dose dependent rect. 13 12
87 230.23 atmosphere 995.0 10 > th dose independent sin 6 NA
95 230.64 atmosphere 995.0 10 < th dose dependent sin 6 NA
96 230.65 atmosphere 995.0 30 < th dose dependent rect. 18 23
97 230.66 atmosphere 995.0 10 < th dose independent sin 6 NA
100 230.70 atmosphere 995.0 90 < th dose independent rect. 14 1
101 230.70 atmosphere 995.0 10 < th dose independent rect. 15 1
228 230.70 atmosphere 995.0 90 < th dose dependent rect. 14 1
395 231.68 temperature 30.0 10 > th dose dependent sin 12 NA
404 231.76 temperature 30.0 10 > th dose dependent rect. 14 2
407 231.79 wind 1.0 10 < th dose independent rect. 21 4
413 231.84 atmosphere 1000.0 30 > th dose independent rect. 3 23
433 232.08 precipitation 0.1 270 > th dose independent rect. 20 1
434 232.08 precipitation 0.1 270 > th dose dependent rect. 20 1
496 233.00 precipitation 0.1 30 > th dose independent rect. 21 3
502 233.00 precipitation 0.1 30 > th dose dependent rect. 21 3
519 233.09 temperature 30.0 30 > th dose dependent rect. 16 1
528 233.11 wind 1.0 10 < th dose independent rect. 23 1
532 233.11 wind 1.0 10 < th dose dependent rect. 23 1
625 234.28 wind 7.0 30 < th dose dependent rect. 2 1
628 234.30 wind 5.0 30 < th dose independent rect. 2 1
633 234.34 temperature 10.0 30 > th dose dependent rect. 2 1
651 234.35 temperature 10.0 30 > th dose independent rect. 2 1
653 234.35 temperature 30.0 30 < th dose independent rect. 2 1
654 234.35 humidity 50.0 30 > th dose independent rect. 2 1
657 234.35 atmosphere 995.0 30 > th dose independent rect. 2 1
658 234.35 atmosphere 1010.0 30 < th dose independent rect. 2 1
660 234.35 radiation 1.0 30 < th dose independent rect. 2 1
665 234.35 precipitation 0.1 30 < th dose independent rect. 2 1
666 234.35 temperature 10.0 30 > th dose independent rect. 3 23
668 234.35 radiation 1.0 30 < th dose dependent rect. 2 1
673 234.35 precipitation 0.1 30 < th dose dependent rect. 2 1
676 234.36 humidity 50.0 30 > th dose dependent rect. 2 1
683 234.38 atmosphere 995.0 30 > th dose dependent rect. 2 1
692 234.45 atmosphere 1015.0 30 < th dose dependent rect. 2 1
743 234.67 wind 1.0 10 < th dose dependent rect. 21 4
753 234.72 temperature 30.0 30 < th dose dependent rect. 2 1
796 235.21 wind 1.0 30 > th dose independent rect. 2 1
888 235.70 temperature 30.0 720 > th dose dependent rect. 12 1
935 236.26 atmosphere 1000.0 90 < th dose independent sin 15 NA
938 236.27 radiation 10.0 14400 < th dose dependent rect. 3 1
965 236.34 wind 9.0 1440 < th dose independent rect. 3 1
966 236.34 temperature 10.0 1440 > th dose independent rect. 3 1
969 236.34 temperature 30.0 1440 < th dose independent rect. 3 1
973 236.34 humidity 50.0 1440 > th dose independent rect. 3 1
982 236.34 atmosphere 995.0 1440 > th dose independent rect. 3 1
983 236.34 radiation 1.0 1440 < th dose independent rect. 3 1