Os02g0521100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0521100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.35 | 0.83 | 3.47 | -0.929 | 0.267 | 1.63 | -0.308 | 5.38 | -0.0356 | 3.37 | 1.2 | 12806 | -- | -- |
| 347.75 | 0.869 | 3.41 | -0.0363 | 0.259 | 1.09 | -0.638 | -- | 0.196 | 3.55 | 3.684 | 12594 | -- | -- |
| 312.16 | 0.823 | 3.46 | -0.914 | 0.26 | 1.71 | -- | 5.55 | -0.0235 | 3.19 | 1.18 | 12743 | -- | -- |
| 347.31 | 0.868 | 3.41 | 0.0517 | 0.139 | 0.979 | -- | -- | 0.159 | 3.01 | 3.67 | 12522 | -- | -- |
| 315.96 | 0.828 | 3.46 | -0.9 | -- | 1.64 | -- | 5.46 | -0.0355 | -- | 1.176 | 12736 | -- | -- |
| 372.11 | 0.904 | 3.38 | -0.00246 | 0.223 | -- | 0.369 | -- | -0.0689 | 7.49 | -- | -- | -- | -- |
| 372.18 | 0.903 | 3.38 | 0.00328 | 0.239 | -- | -- | -- | -0.0712 | 6.35 | -- | -- | -- | -- |
| 346.7 | 0.867 | 3.34 | -0.0145 | -- | 0.974 | -- | -- | 0.158 | -- | 3.688 | 12308 | -- | -- |
| 344.68 | 0.865 | 3.33 | -- | 0.187 | 1.01 | -- | -- | 0.237 | 1.78 | 3.69 | 12641 | -- | -- |
| 375.15 | 0.905 | 3.39 | 0.00957 | -- | -- | -- | -- | -0.066 | -- | -- | -- | -- | -- |
| 372.18 | 0.902 | 3.38 | -- | 0.239 | -- | -- | -- | -0.0715 | 6.35 | -- | -- | -- | -- |
| 346.17 | 0.867 | 3.33 | -- | -- | 1.04 | -- | -- | 0.232 | -- | 3.69 | 12484 | -- | -- |
| 375.15 | 0.904 | 3.39 | -- | -- | -- | -- | -- | -0.0671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.25 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 3 | 305.38 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 59 | 306.68 | temperature | 20 | 14400 | < th | dose dependent | sin | 8 | NA |
| 74 | 306.80 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 219 | 308.34 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 228 | 308.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 260 | 308.64 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 265 | 308.70 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 278 | 308.73 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 289 | 308.79 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 301 | 308.90 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 346 | 309.67 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 371 | 310.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 447 | 311.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 470 | 311.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 525 | 311.83 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 578 | 312.21 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 588 | 312.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 593 | 312.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 622 | 312.47 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 638 | 312.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 676 | 312.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 677 | 312.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 8 |
| 686 | 312.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 20 |
| 699 | 312.83 | radiation | 1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 721 | 312.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 754 | 313.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 792 | 313.08 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 798 | 313.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 812 | 313.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 21 |
| 873 | 313.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 913 | 313.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 916 | 313.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 947 | 313.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 960 | 313.94 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 980 | 313.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 983 | 314.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 990 | 314.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 992 | 314.04 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 1 |