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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0518600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.0314) R2 : 0.484
β1 : 1.61 (0.115) R2dD : 0.23 R2D : 0.22
β2 : 1.22 (0.0819) R2dC : 0.255 R2C : 0.26
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.126 (0.067) R2dN8 : 0.00536 R2N8 : -0.00742
σ : 0.59
deviance : 158.75
__
_____
C
peak time of C : 6.42
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.78 0.565 4.78 2.03 1.25 0.58 -0.456 -1.33 0.293 6.36 1010 3941 -- --
149.52 0.57 4.8 1.86 1.25 0.611 -0.296 -- 0.266 6.38 1010 5946 -- --
145.28 0.561 4.78 2.02 1.25 0.585 -- -1.28 0.292 6.37 1010 3928 -- --
149.72 0.57 4.8 1.83 1.24 0.581 -- -- 0.251 6.4 1010 5981 -- --
225.86 0.7 4.81 2 -- 0.503 -- -1.37 0.29 -- 1010 3588 -- --
158.58 0.59 4.83 1.61 1.23 -- -0.263 -- 0.125 6.41 -- -- -- --
158.75 0.59 4.83 1.61 1.22 -- -- -- 0.126 6.42 -- -- -- --
228.94 0.705 4.83 1.86 -- 0.511 -- -- 0.274 -- 1010 6479 -- --
223.98 0.697 4.88 -- 1.35 0.469 -- -- -0.0247 6.47 1014 3238 -- --
236.67 0.719 4.86 1.64 -- -- -- -- 0.152 -- -- -- -- --
226.98 0.705 4.87 -- 1.25 -- -- -- -0.0532 6.34 -- -- -- --
274.93 0.772 4.95 -- -- -0.945 -- -- -0.257 -- 1012 47520 -- --
307.65 0.819 4.9 -- -- -- -- -- -0.0302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.90 radiation 1 4320 < th dose independent rect. 18 1
2 139.91 radiation 1 4320 < th dose independent rect. 18 9
6 139.96 radiation 1 4320 < th dose independent rect. 18 5
12 142.72 radiation 1 4320 > th dose independent rect. 18 1
22 143.21 humidity 60 14400 < th dose independent rect. 18 2
35 143.40 humidity 60 14400 < th dose dependent rect. 17 16
36 143.45 humidity 60 14400 > th dose independent rect. 18 2
37 143.48 humidity 60 14400 < th dose dependent rect. 17 3
50 143.72 humidity 60 14400 > th dose independent rect. 18 5
51 143.72 humidity 60 14400 > th dose independent rect. 18 9
53 143.74 humidity 60 14400 > th dose independent rect. 18 7
64 144.08 humidity 70 14400 < th dose dependent rect. 19 1
65 144.15 humidity 50 14400 > th dose independent rect. 17 16
66 144.43 radiation 1 4320 < th dose dependent rect. 18 1
79 144.49 radiation 1 4320 < th dose dependent rect. 18 5
82 144.51 radiation 1 4320 < th dose dependent rect. 18 7
103 144.88 wind 7 1440 < th dose independent rect. 23 1
144 145.17 atmosphere 1010 4320 > th dose dependent rect. 16 14
150 145.19 radiation 1 4320 > th dose dependent rect. 18 11
156 145.19 atmosphere 1010 4320 > th dose dependent rect. 16 19
175 145.22 atmosphere 1010 4320 > th dose dependent sin 13 NA
189 145.24 atmosphere 1010 4320 > th dose dependent rect. 18 4
202 145.26 atmosphere 1010 4320 > th dose dependent rect. 19 2
269 145.33 atmosphere 1010 4320 > th dose dependent rect. 9 22
283 145.35 atmosphere 1010 4320 > th dose dependent no NA NA
288 145.35 atmosphere 1010 4320 > th dose dependent rect. 1 21
298 145.35 atmosphere 1010 4320 > th dose dependent rect. 5 23
366 145.39 atmosphere 1010 4320 > th dose dependent rect. 5 19
388 145.41 atmosphere 1010 4320 > th dose dependent rect. 5 17
412 145.43 humidity 50 14400 < th dose dependent rect. 16 19
573 145.63 atmosphere 1010 4320 > th dose dependent rect. 3 1
591 145.66 wind 1 43200 > th dose independent rect. 2 1
599 145.67 atmosphere 1010 4320 > th dose dependent rect. 1 5
608 145.68 atmosphere 1010 4320 > th dose dependent rect. 1 3
620 145.70 atmosphere 1010 4320 > th dose dependent rect. 23 2
665 145.79 atmosphere 1010 4320 > th dose dependent rect. 9 2
685 145.83 atmosphere 1010 4320 > th dose independent rect. 9 3
698 145.85 atmosphere 1010 4320 > th dose independent rect. 16 1
703 145.86 atmosphere 1010 4320 < th dose independent rect. 16 1
713 145.87 humidity 90 43200 < th dose dependent rect. 11 1
779 145.95 atmosphere 1010 4320 > th dose dependent rect. 5 1
794 145.97 humidity 50 43200 < th dose independent rect. 16 1
797 145.97 atmosphere 1010 4320 < th dose independent rect. 9 3
832 146.01 wind 9 43200 < th dose independent rect. 19 2
906 146.10 wind 9 43200 > th dose independent rect. 19 2
907 146.10 humidity 50 43200 < th dose independent rect. 4 6
918 146.11 radiation 1 4320 > th dose dependent rect. 18 1
940 146.13 radiation 40 14400 < th dose independent rect. 15 12
965 146.16 humidity 50 43200 > th dose independent rect. 4 6
966 146.16 atmosphere 1010 4320 > th dose independent rect. 9 9
980 146.18 radiation 40 14400 < th dose independent rect. 15 8
999 146.20 radiation 40 14400 < th dose independent rect. 15 4