Os02g0518400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0518400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.64 | 0.469 | 7.61 | -1.36 | 1.6 | -0.126 | 0.0514 | 1.98 | -0.117 | 7.09 | 39.9 | 30 | -- | -- |
| 107.1 | 0.482 | 7.64 | -1.34 | 1.64 | -0.486 | -0.331 | -- | -0.135 | 6.92 | 49.4 | 68 | -- | -- |
| 99.12 | 0.467 | 7.62 | -1.39 | 1.6 | -0.0436 | -- | 1.99 | -0.122 | 7.17 | 39.9 | 30 | -- | -- |
| 107.1 | 0.482 | 7.64 | -1.33 | 1.62 | -0.494 | -- | -- | -0.134 | 6.94 | 49.4 | 68 | -- | -- |
| 232.42 | 0.71 | 7.64 | -1.34 | -- | -0.507 | -- | 2.33 | -0.083 | -- | 49.73 | 65 | -- | -- |
| 110.49 | 0.493 | 7.62 | -1.44 | 1.6 | -- | -0.33 | -- | -0.135 | 7.23 | -- | -- | -- | -- |
| 110.78 | 0.493 | 7.62 | -1.45 | 1.6 | -- | -- | -- | -0.134 | 7.21 | -- | -- | -- | -- |
| 237.94 | 0.718 | 7.65 | -1.31 | -- | -0.761 | -- | -- | -0.0985 | -- | 48.55 | 67 | -- | -- |
| 150.23 | 0.571 | 7.58 | -- | 1.59 | -1.49 | -- | -- | 0.0539 | 6.58 | 59.96 | 266 | -- | -- |
| 246.94 | 0.734 | 7.66 | -1.42 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 166.21 | 0.603 | 7.59 | -- | 1.59 | -- | -- | -- | 0.0271 | 7.27 | -- | -- | -- | -- |
| 277.63 | 0.776 | 7.61 | -- | -- | -1.83 | -- | -- | 0.0884 | -- | 59.85 | 100 | -- | -- |
| 300.22 | 0.809 | 7.62 | -- | -- | -- | -- | -- | 0.051 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.64 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 10 |
| 6 | 97.45 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 7 | 97.59 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 14 |
| 13 | 97.95 | temperature | 30 | 90 | < th | dose independent | rect. | 19 | 20 |
| 15 | 97.98 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 15 |
| 17 | 98.02 | radiation | 40 | 30 | < th | dose independent | rect. | 21 | 23 |
| 28 | 98.42 | radiation | 40 | 30 | < th | dose independent | rect. | 15 | 22 |
| 66 | 99.33 | radiation | 40 | 30 | < th | dose independent | rect. | 5 | 23 |
| 80 | 99.57 | radiation | 40 | 30 | < th | dose independent | rect. | 23 | 23 |
| 81 | 99.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 83 | 99.60 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 84 | 99.61 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 19 |
| 89 | 99.63 | radiation | 40 | 30 | < th | dose independent | rect. | 9 | 23 |
| 92 | 99.64 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 7 |
| 94 | 99.65 | radiation | 40 | 30 | < th | dose independent | no | NA | NA |
| 107 | 99.77 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 110 | 99.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 117 | 99.87 | radiation | 40 | 10 | < th | dose independent | rect. | 1 | 23 |
| 128 | 99.93 | radiation | 30 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 134 | 99.98 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 142 | 100.04 | radiation | 1 | 30 | > th | dose dependent | rect. | 6 | 9 |
| 147 | 100.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 148 | 100.07 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 164 | 100.11 | radiation | 40 | 10 | < th | dose independent | rect. | 24 | 12 |
| 175 | 100.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 177 | 100.16 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 180 | 100.18 | radiation | 30 | 30 | > th | dose dependent | no | NA | NA |
| 181 | 100.18 | radiation | 30 | 30 | > th | dose dependent | rect. | 7 | 9 |
| 182 | 100.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 294 | 100.18 | radiation | 30 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 303 | 100.19 | temperature | 15 | 270 | > th | dose independent | rect. | 4 | 9 |
| 312 | 100.20 | radiation | 40 | 10 | < th | dose independent | rect. | 7 | 23 |
| 313 | 100.20 | radiation | 30 | 30 | > th | dose dependent | sin | 21 | NA |
| 356 | 100.22 | radiation | 30 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 418 | 100.27 | radiation | 40 | 30 | < th | dose independent | sin | 5 | NA |
| 425 | 100.28 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 430 | 100.29 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 5 |
| 556 | 100.30 | radiation | 40 | 10 | < th | dose independent | sin | 17 | NA |
| 823 | 100.33 | radiation | 40 | 90 | < th | dose independent | rect. | 23 | 21 |
| 889 | 100.36 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 8 | 14 |
| 928 | 100.37 | radiation | 40 | 270 | < th | dose independent | rect. | 23 | 10 |