Os02g0516800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0516800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.18 | 0.396 | 9.08 | 0.601 | 0.101 | -1.86 | -0.856 | 0.525 | 0.475 | 21.5 | 15.13 | 292 | -- | -- |
| 71.29 | 0.393 | 9.09 | 0.524 | 0.158 | -1.91 | -0.812 | -- | 0.456 | 22 | 13.98 | 344 | -- | -- |
| 73.83 | 0.4 | 9.07 | 0.636 | 0.127 | -1.89 | -- | 0.53 | 0.483 | 21.1 | 15.12 | 311 | -- | -- |
| 73.83 | 0.4 | 9.09 | 0.562 | 0.168 | -1.89 | -- | -- | 0.462 | 21.7 | 14.96 | 346 | -- | -- |
| 74.4 | 0.402 | 9.07 | 0.64 | -- | -1.86 | -- | 0.611 | 0.476 | -- | 15 | 260 | -- | -- |
| 114.04 | 0.501 | 9.14 | 0.145 | 0.503 | -- | 0.152 | -- | 0.183 | 4.31 | -- | -- | -- | -- |
| 114.08 | 0.5 | 9.14 | 0.143 | 0.503 | -- | -- | -- | 0.182 | 4.17 | -- | -- | -- | -- |
| 74.61 | 0.402 | 9.08 | 0.545 | -- | -1.86 | -- | -- | 0.45 | -- | 14.8 | 266 | -- | -- |
| 81.46 | 0.42 | 9.1 | -- | 0.129 | -1.64 | -- | -- | 0.378 | 21.9 | 15.5 | 317 | -- | -- |
| 127.76 | 0.528 | 9.14 | 0.163 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 114.62 | 0.501 | 9.14 | -- | 0.505 | -- | -- | -- | 0.167 | 4.17 | -- | -- | -- | -- |
| 81.92 | 0.422 | 9.1 | -- | -- | -1.63 | -- | -- | 0.369 | -- | 15.4 | 265 | -- | -- |
| 128.47 | 0.529 | 9.14 | -- | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.76 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 2 | 63.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 37 | 65.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 70 | 66.47 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 78 | 66.65 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 81 | 66.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 175 | 68.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 255 | 69.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 270 | 70.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 311 | 70.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 360 | 71.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 363 | 71.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 385 | 71.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 392 | 71.33 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 393 | 71.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 489 | 72.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 664 | 73.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 671 | 73.20 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 701 | 73.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 805 | 73.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 874 | 74.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 887 | 74.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 895 | 74.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 903 | 74.44 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 907 | 74.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 980 | 74.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 981 | 74.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 984 | 74.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |