Os02g0515600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LPS-induced tumor necrosis factor alpha factor domain containing protein.
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Os02g0515600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LPS-induced tumor necrosis factor alpha factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.41 | 0.246 | 10.7 | 0.481 | 1.98 | -1.03 | -0.306 | 6.27 | -0.227 | 15.6 | 33.6 | 1139 | -- | -- |
| 29.68 | 0.254 | 10.7 | -0.378 | 1.96 | -0.254 | -0.684 | -- | -0.158 | 15.5 | 33.33 | 1248 | -- | -- |
| 27.61 | 0.245 | 10.7 | 0.456 | 1.98 | -1.07 | -- | 6.48 | -0.228 | 15.6 | 34.09 | 1227 | -- | -- |
| 29.26 | 0.252 | 10.8 | -0.335 | 1.97 | -0.251 | -- | -- | -0.193 | 15.5 | 33.26 | 1257 | -- | -- |
| 241.82 | 0.724 | 10.7 | 0.53 | -- | -1.3 | -- | 6.37 | -0.291 | -- | 33.59 | 1156 | -- | -- |
| 32.92 | 0.269 | 10.8 | -0.446 | 2.01 | -- | -0.26 | -- | -0.178 | 15.6 | -- | -- | -- | -- |
| 33.12 | 0.27 | 10.8 | -0.45 | 2.01 | -- | -- | -- | -0.18 | 15.6 | -- | -- | -- | -- |
| 179.79 | 0.627 | 10.8 | -0.795 | -- | 1.75 | -- | -- | -0.43 | -- | 24 | 1181 | -- | -- |
| 32.72 | 0.266 | 10.8 | -- | 1.98 | -0.33 | -- | -- | -0.2 | 15.6 | 32.13 | 1255 | -- | -- |
| 257.37 | 0.75 | 10.8 | -0.534 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 38.46 | 0.29 | 10.7 | -- | 2.01 | -- | -- | -- | -0.13 | 15.6 | -- | -- | -- | -- |
| 196.08 | 0.654 | 10.8 | -- | -- | 1.63 | -- | -- | -0.33 | -- | 24 | 1181 | -- | -- |
| 264.89 | 0.76 | 10.7 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.80 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 2 | 22.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 11 | 23.84 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 24 | 24.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 25 | 24.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 27 | 24.41 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 28 | 24.44 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 29 | 24.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 32 | 24.47 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 34 | 24.50 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 35 | 24.50 | wind | 5.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 36 | 24.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 39 | 24.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 41 | 24.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 42 | 24.54 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 46 | 24.56 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 47 | 24.58 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 51 | 24.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 13 |
| 52 | 24.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 57 | 24.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 58 | 24.68 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 13 |
| 65 | 24.71 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 66 | 24.71 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 15 |
| 69 | 24.71 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 73 | 24.76 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 77 | 24.77 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 84 | 24.81 | wind | 5.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 86 | 24.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 95 | 24.86 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 96 | 24.86 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 23 |
| 111 | 24.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 126 | 24.96 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 143 | 25.00 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 152 | 25.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 153 | 25.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 155 | 25.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 164 | 25.06 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 176 | 25.09 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 190 | 25.12 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 22 |
| 191 | 25.12 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 195 | 25.14 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 197 | 25.14 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 198 | 25.14 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 201 | 25.14 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 202 | 25.14 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 204 | 25.14 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 208 | 25.14 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 210 | 25.15 | humidity | 80.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 224 | 25.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 226 | 25.19 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 227 | 25.19 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 230 | 25.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 231 | 25.19 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 233 | 25.19 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 236 | 25.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 2 |
| 237 | 25.19 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 238 | 25.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 240 | 25.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 252 | 25.22 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 258 | 25.24 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 282 | 25.28 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 334 | 25.35 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 22 |
| 337 | 25.35 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 339 | 25.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 360 | 25.37 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 370 | 25.39 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 17 | 13 |
| 381 | 25.41 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 386 | 25.42 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 412 | 25.50 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 18 | 13 |
| 413 | 25.51 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 418 | 25.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 451 | 25.55 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 469 | 25.59 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 493 | 25.61 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 532 | 25.66 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 541 | 25.67 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 542 | 25.67 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 587 | 25.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 610 | 25.77 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 645 | 25.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 20 |
| 649 | 25.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 665 | 25.83 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 19 |
| 686 | 25.85 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 10 |
| 690 | 25.86 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 691 | 25.86 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 700 | 25.87 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 704 | 25.87 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 710 | 25.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 714 | 25.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 725 | 25.89 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 748 | 25.91 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 769 | 25.93 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 780 | 25.94 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 781 | 25.94 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 788 | 25.94 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 805 | 25.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 22 |
| 807 | 25.95 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 815 | 25.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 817 | 25.96 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 818 | 25.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 821 | 25.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 822 | 25.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 840 | 25.97 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 842 | 25.98 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 851 | 25.99 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 853 | 25.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 858 | 26.00 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 19 |
| 866 | 26.01 | humidity | 50.0 | 720 | > th | dose independent | rect. | 21 | 21 |
| 928 | 26.05 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 18 |
| 936 | 26.05 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 949 | 26.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 22 |
| 957 | 26.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 970 | 26.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 971 | 26.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 972 | 26.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 973 | 26.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 976 | 26.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 977 | 26.10 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 988 | 26.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 999 | 26.10 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 14 |