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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0514800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0459) R2 : 0.00983
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.206 (0.0967) R2dN8 : 0.0127 R2N8 : 0.00983
σ : 0.865
deviance : 343.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.04 0.851 3.08 -0.724 0.0818 -0.243 -0.833 2.87 -0.504 11.1 24.58 769 -- --
341.7 0.861 2.99 0.105 0.0105 -0.155 -0.138 -- -0.228 11.4 21.07 1066 -- --
330.36 0.847 3.07 -0.641 0.0812 -0.223 -- 2.37 -0.474 10.3 24.5 700 -- --
340.45 0.859 2.99 0.0768 0.00891 -0.355 -- -- -0.229 12.4 18.99 673 -- --
327.24 0.843 3.06 -0.555 -- -0.065 -- 2.12 -0.377 -- 23.1 628 -- --
342.01 0.867 2.98 0.168 0.0315 -- -0.469 -- -0.184 16.7 -- -- -- --
342.58 0.867 2.98 0.166 0.0293 -- -- -- -0.187 17.4 -- -- -- --
340.08 0.859 2.99 0.0344 -- -0.425 -- -- -0.229 -- 18.5 537 -- --
340.11 0.859 2.99 -- 0.0214 -0.423 -- -- -0.25 11.9 18.2 570 -- --
342.63 0.865 2.98 0.165 -- -- -- -- -0.187 -- -- -- -- --
343.31 0.867 2.98 -- 0.0266 -- -- -- -0.205 17.7 -- -- -- --
340.06 0.859 2.99 -- -- -0.465 -- -- -0.245 -- 18.4 524 -- --
343.35 0.865 2.98 -- -- -- -- -- -0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.74 wind 7.0 4320 < th dose independent rect. 24 2
2 321.93 wind 7.0 4320 > th dose dependent rect. 24 2
3 321.94 wind 7.0 4320 > th dose independent rect. 24 2
17 322.96 wind 3.0 10 > th dose dependent rect. 1 6
20 323.56 wind 3.0 10 > th dose independent rect. 1 5
23 323.83 temperature 20.0 720 > th dose dependent rect. 18 12
36 324.60 temperature 20.0 270 > th dose dependent rect. 24 7
61 325.69 temperature 20.0 720 > th dose dependent sin 12 NA
66 325.90 wind 3.0 10 < th dose dependent rect. 11 20
90 326.31 radiation 10.0 4320 < th dose dependent rect. 12 1
107 326.72 temperature 20.0 720 > th dose dependent rect. 23 4
125 327.14 temperature 25.0 720 < th dose independent rect. 14 12
126 327.17 wind 9.0 4320 < th dose dependent rect. 24 2
136 327.35 temperature 20.0 720 > th dose dependent rect. 1 2
139 327.37 wind 7.0 90 > th dose independent rect. 24 8
145 327.45 temperature 25.0 720 < th dose independent rect. 14 19
156 327.59 precipitation 0.1 270 > th dose independent rect. 22 1
157 327.59 precipitation 0.1 270 > th dose dependent rect. 22 1
158 327.59 wind 7.0 90 > th dose dependent rect. 23 3
160 327.62 wind 7.0 90 > th dose independent rect. 23 3
169 327.67 wind 5.0 90 > th dose independent rect. 1 1
172 327.67 wind 5.0 90 > th dose dependent rect. 1 1
183 327.70 wind 3.0 4320 < th dose independent rect. 10 3
217 327.82 wind 5.0 90 > th dose dependent rect. 21 5
236 327.97 wind 5.0 90 > th dose dependent rect. 21 9
254 328.06 temperature 20.0 1440 > th dose dependent rect. 5 1
257 328.10 wind 3.0 10 > th dose dependent rect. 2 1
282 328.28 wind 1.0 43200 > th dose independent rect. 21 1
283 328.28 wind 3.0 4320 > th dose independent rect. 10 2
286 328.28 wind 5.0 4320 < th dose dependent rect. 10 1
314 328.48 temperature 25.0 720 < th dose independent sin 14 NA
315 328.48 temperature 25.0 4320 > th dose independent rect. 16 1
319 328.51 wind 3.0 10 > th dose independent rect. 2 1
334 328.57 temperature 20.0 10 > th dose dependent rect. 2 5
336 328.57 wind 3.0 10 < th dose dependent rect. 2 22
347 328.68 wind 3.0 10 < th dose dependent rect. 21 10
350 328.69 wind 5.0 1440 > th dose dependent rect. 1 7
358 328.75 atmosphere 1010.0 4320 > th dose dependent rect. 11 2
367 328.79 atmosphere 1010.0 4320 > th dose dependent rect. 10 4
394 328.91 humidity 80.0 4320 > th dose independent rect. 8 2
413 328.99 radiation 10.0 4320 > th dose independent rect. 12 1
423 329.03 temperature 25.0 720 > th dose independent rect. 18 20
424 329.04 precipitation 0.1 43200 > th dose independent rect. 21 1
425 329.04 precipitation 0.1 43200 < th dose independent rect. 21 1
426 329.04 precipitation 0.1 43200 < th dose dependent rect. 21 1
440 329.11 wind 3.0 30 < th dose dependent rect. 18 13
445 329.13 wind 7.0 4320 > th dose dependent rect. 21 1
447 329.15 wind 1.0 4320 > th dose dependent rect. 10 1
458 329.22 temperature 25.0 720 > th dose independent sin 14 NA
460 329.22 temperature 25.0 720 > th dose independent rect. 16 16
473 329.27 temperature 25.0 720 < th dose independent rect. 11 15
474 329.27 wind 5.0 1440 > th dose dependent rect. 5 2
480 329.28 precipitation 0.1 43200 > th dose dependent rect. 21 2
481 329.28 wind 5.0 1440 > th dose dependent rect. 24 9
487 329.29 temperature 30.0 720 < th dose dependent rect. 21 5
488 329.30 temperature 25.0 720 < th dose independent rect. 5 21
492 329.31 wind 5.0 1440 > th dose independent rect. 1 7
496 329.31 wind 5.0 1440 > th dose dependent rect. 4 4
497 329.32 temperature 25.0 720 > th dose independent rect. 18 13
512 329.35 wind 3.0 10 < th dose dependent rect. 21 19
521 329.39 temperature 25.0 4320 < th dose independent rect. 16 2
531 329.42 wind 5.0 1440 < th dose independent rect. 24 8
553 329.48 temperature 25.0 720 > th dose independent rect. 18 3
555 329.48 wind 5.0 90 > th dose independent rect. 20 6
558 329.48 temperature 25.0 720 < th dose independent rect. 11 21
565 329.51 humidity 50.0 4320 < th dose dependent rect. 13 1
567 329.52 temperature 25.0 4320 < th dose independent rect. 16 14
586 329.57 radiation 10.0 4320 < th dose independent rect. 12 1
588 329.58 precipitation 0.1 4320 > th dose independent rect. 22 1
589 329.58 temperature 25.0 4320 < th dose independent rect. 16 11
591 329.58 precipitation 0.1 4320 > th dose dependent rect. 22 1
597 329.59 temperature 25.0 720 > th dose independent rect. 18 9
602 329.60 wind 5.0 90 > th dose independent rect. 20 10
607 329.62 wind 5.0 1440 > th dose independent rect. 24 9
610 329.63 temperature 20.0 1440 > th dose independent rect. 4 1
619 329.64 temperature 10.0 720 > th dose dependent rect. 18 11
633 329.67 temperature 20.0 1440 < th dose independent rect. 4 1
644 329.69 precipitation 0.1 4320 < th dose independent rect. 22 1
647 329.69 precipitation 0.1 4320 < th dose dependent rect. 22 1
685 329.77 wind 3.0 10 < th dose dependent rect. 18 22
697 329.81 humidity 50.0 14400 < th dose independent rect. 13 1
706 329.82 temperature 25.0 720 > th dose independent rect. 10 21
719 329.86 wind 1.0 43200 < th dose independent rect. 21 1
722 329.87 temperature 25.0 4320 > th dose independent rect. 16 14
739 329.90 temperature 25.0 4320 > th dose independent rect. 16 10
748 329.91 temperature 20.0 720 > th dose dependent rect. 18 3
751 329.91 wind 5.0 1440 > th dose dependent rect. 23 12
765 329.93 wind 1.0 43200 < th dose dependent rect. 19 3
783 329.96 wind 5.0 1440 < th dose independent rect. 5 2
801 329.98 wind 1.0 1440 > th dose dependent rect. 4 1
803 329.99 wind 5.0 1440 > th dose independent rect. 5 2
814 330.00 wind 7.0 1440 < th dose independent rect. 23 12
822 330.01 temperature 10.0 720 > th dose dependent rect. 18 6
833 330.03 atmosphere 1015.0 4320 < th dose independent rect. 10 1
838 330.04 atmosphere 1015.0 4320 > th dose independent rect. 10 1
842 330.04 temperature 30.0 720 < th dose dependent rect. 23 3
867 330.08 temperature 25.0 720 < th dose independent rect. 23 3
868 330.08 humidity 50.0 14400 > th dose independent rect. 9 5
881 330.10 temperature 20.0 4320 > th dose dependent rect. 21 1
889 330.11 wind 3.0 10 < th dose dependent no NA NA
895 330.13 humidity 80.0 4320 < th dose independent rect. 8 2
899 330.14 wind 1.0 90 < th dose independent rect. 2 1
906 330.14 temperature 20.0 720 > th dose dependent rect. 19 1
910 330.15 humidity 50.0 14400 > th dose independent rect. 13 1
919 330.16 wind 3.0 10 < th dose dependent rect. 15 23
923 330.17 wind 3.0 10 < th dose independent rect. 12 19
943 330.20 humidity 50.0 14400 > th dose independent rect. 4 10
951 330.21 humidity 50.0 14400 > th dose independent rect. 7 7
977 330.23 wind 7.0 1440 > th dose independent rect. 23 12
998 330.26 radiation 10.0 14400 < th dose independent rect. 17 21