Os02g0514700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0514700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.06 | 0.613 | 7.76 | 1.62 | 0.543 | -2.83 | 0.356 | 1.64 | 0.544 | 13.6 | 16.31 | 333 | -- | -- |
| 172.06 | 0.611 | 7.8 | 1.35 | 0.525 | -2.75 | 0.592 | -- | 0.46 | 13.8 | 16.41 | 332 | -- | -- |
| 170.5 | 0.608 | 7.75 | 1.68 | 0.542 | -2.8 | -- | 1.92 | 0.562 | 13.7 | 16.65 | 332 | -- | -- |
| 173.04 | 0.613 | 7.79 | 1.36 | 0.534 | -2.89 | -- | -- | 0.467 | 13.7 | 15.4 | 334 | -- | -- |
| 174.33 | 0.615 | 7.75 | 1.74 | -- | -2.62 | -- | 2.05 | 0.549 | -- | 16.39 | 604 | -- | -- |
| 270.19 | 0.771 | 7.87 | 0.697 | 0.698 | -- | 0.405 | -- | 0.0323 | 7.86 | -- | -- | -- | -- |
| 270.66 | 0.77 | 7.87 | 0.707 | 0.699 | -- | -- | -- | 0.0316 | 7.79 | -- | -- | -- | -- |
| 175.16 | 0.616 | 7.8 | 1.38 | -- | -2.7 | -- | -- | 0.457 | -- | 15.44 | 636 | -- | -- |
| 215.64 | 0.684 | 7.83 | -- | 0.456 | -1.97 | -- | -- | 0.244 | 12.4 | 18.7 | 332 | -- | -- |
| 297.11 | 0.805 | 7.89 | 0.715 | -- | -- | -- | -- | 0.0414 | -- | -- | -- | -- | -- |
| 283.83 | 0.788 | 7.89 | -- | 0.704 | -- | -- | -- | -0.0471 | 7.72 | -- | -- | -- | -- |
| 219.9 | 0.691 | 7.84 | -- | -- | -2.06 | -- | -- | 0.243 | -- | 17.17 | 584 | -- | -- |
| 310.61 | 0.823 | 7.91 | -- | -- | -- | -- | -- | -0.038 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 3 | 168.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 4 | 168.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 12 | 170.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 16 | 170.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 17 | 170.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 18 | 171.02 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 21 | 171.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 28 | 171.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 33 | 171.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 49 | 172.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 52 | 172.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 53 | 172.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 67 | 173.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 69 | 173.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 85 | 173.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 89 | 173.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 91 | 173.85 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 150 | 174.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 160 | 175.05 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 161 | 175.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 185 | 175.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 286 | 176.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 321 | 176.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 330 | 176.89 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 459 | 177.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 498 | 177.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 515 | 177.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 522 | 177.92 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 544 | 178.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 730 | 178.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 740 | 178.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 746 | 178.91 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 790 | 179.09 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 796 | 179.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 808 | 179.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 871 | 179.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 874 | 179.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 906 | 179.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 963 | 179.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 969 | 179.74 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 999 | 179.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |