Os02g0512300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0512300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.33 | 0.346 | 8.1 | -0.399 | 0.485 | 0.457 | 0.309 | 0.653 | -0.295 | 20.1 | 29.9 | 2684 | -- | -- |
| 54.38 | 0.343 | 8.09 | -0.282 | 0.485 | 0.528 | 0.298 | -- | -0.281 | 20 | 29.8 | 2683 | -- | -- |
| 54.61 | 0.344 | 8.1 | -0.399 | 0.486 | 0.459 | -- | 0.611 | -0.294 | 20 | 29.86 | 2691 | -- | -- |
| 54.64 | 0.344 | 8.09 | -0.275 | 0.489 | 0.53 | -- | -- | -0.283 | 20 | 29.81 | 2689 | -- | -- |
| 67.3 | 0.382 | 8.09 | -0.42 | -- | 0.426 | -- | 0.705 | -0.303 | -- | 30 | 2795 | -- | -- |
| 66.46 | 0.382 | 8.07 | -0.427 | 0.479 | -- | 0.276 | -- | -0.219 | 19.5 | -- | -- | -- | -- |
| 66.67 | 0.382 | 8.07 | -0.433 | 0.479 | -- | -- | -- | -0.219 | 19.5 | -- | -- | -- | -- |
| 67.52 | 0.383 | 8.08 | -0.287 | -- | 0.523 | -- | -- | -0.297 | -- | 30 | 2765 | -- | -- |
| 56.55 | 0.35 | 8.08 | -- | 0.476 | 0.568 | -- | -- | -0.257 | 20 | 29.9 | 2692 | -- | -- |
| 78.94 | 0.415 | 8.06 | -0.441 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 71.62 | 0.396 | 8.06 | -- | 0.483 | -- | -- | -- | -0.17 | 19.4 | -- | -- | -- | -- |
| 69.56 | 0.388 | 8.07 | -- | -- | 0.552 | -- | -- | -0.279 | -- | 29.99 | 2795 | -- | -- |
| 84.06 | 0.428 | 8.05 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 2 | 53.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 8 | 54.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 11 | 54.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 13 | 54.47 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 15 | 54.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 19 | 54.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 20 | 54.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 21 | 54.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 23 | 54.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 30 | 54.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 40 | 54.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 56 | 54.59 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 20 |
| 83 | 54.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 101 | 54.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 137 | 54.76 | temperature | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 164 | 54.80 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 170 | 54.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 196 | 54.86 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 206 | 54.89 | temperature | 30 | 1440 | > th | dose independent | sin | 3 | NA |
| 210 | 54.89 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 19 |
| 214 | 54.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 231 | 54.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 233 | 54.93 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 274 | 54.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 325 | 55.03 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 336 | 55.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 337 | 55.06 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 342 | 55.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 383 | 55.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 426 | 55.12 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 427 | 55.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 434 | 55.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 436 | 55.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 441 | 55.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 451 | 55.14 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 559 | 55.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 571 | 55.15 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 610 | 55.19 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 685 | 55.24 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 823 | 55.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 833 | 55.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 910 | 55.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 929 | 55.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 932 | 55.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 960 | 55.33 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |