Os02g0512200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0512200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.25 | 0.473 | 8.15 | 0.935 | 1.28 | 0.446 | 1.01 | -1.17 | 0.361 | 18.6 | 18.85 | 1348 | -- | -- |
| 104.49 | 0.476 | 8.16 | 0.89 | 1.25 | 0.447 | 1.11 | -- | 0.338 | 18.6 | 19.15 | 1345 | -- | -- |
| 103.78 | 0.474 | 8.15 | 0.923 | 1.28 | 0.451 | -- | -1.21 | 0.358 | 18.6 | 18.86 | 1330 | -- | -- |
| 107.21 | 0.482 | 8.15 | 0.847 | 1.27 | 0.426 | -- | -- | 0.325 | 18.6 | 18.86 | 1345 | -- | -- |
| 188.43 | 0.639 | 8.14 | 0.974 | -- | 0.437 | -- | -1.16 | 0.368 | -- | 17.21 | 1416 | -- | -- |
| 110.53 | 0.493 | 8.18 | 0.774 | 1.26 | -- | 1.09 | -- | 0.221 | 18.4 | -- | -- | -- | -- |
| 113.48 | 0.499 | 8.18 | 0.76 | 1.27 | -- | -- | -- | 0.224 | 18.4 | -- | -- | -- | -- |
| 190.77 | 0.643 | 8.14 | 0.836 | -- | 0.41 | -- | -- | 0.316 | -- | 17.09 | 1428 | -- | -- |
| 123.9 | 0.518 | 8.17 | -- | 1.27 | 0.32 | -- | -- | 0.239 | 18.6 | 19.98 | 1294 | -- | -- |
| 197.02 | 0.656 | 8.15 | 0.727 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 128.69 | 0.531 | 8.2 | -- | 1.26 | -- | -- | -- | 0.14 | 18.4 | -- | -- | -- | -- |
| 205.54 | 0.668 | 8.16 | -- | -- | 0.374 | -- | -- | 0.195 | -- | 19.96 | 1417 | -- | -- |
| 210.95 | 0.678 | 8.17 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.59 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 96.92 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 6 | 97.15 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 7 | 97.21 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 11 | 97.37 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 25 | 98.04 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 31 | 98.12 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 32 | 98.12 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 44 | 98.37 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 50 | 98.62 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 58 | 98.77 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 71 | 98.90 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 77 | 98.99 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 82 | 99.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 90 | 99.14 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 110 | 99.35 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 121 | 99.46 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 133 | 99.53 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 140 | 99.55 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 145 | 99.57 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 154 | 99.60 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 168 | 99.66 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 175 | 99.74 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 180 | 99.76 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 202 | 99.85 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 214 | 99.90 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 218 | 99.91 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 221 | 99.92 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 237 | 99.95 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 8 |
| 300 | 100.15 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 310 | 100.17 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 379 | 100.44 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 460 | 100.66 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 476 | 100.71 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 479 | 100.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 506 | 100.76 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 512 | 100.80 | radiation | 10.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 584 | 100.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 588 | 100.96 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 589 | 100.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 603 | 100.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 604 | 100.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 608 | 100.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 612 | 101.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 614 | 101.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 643 | 101.05 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 659 | 101.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 697 | 101.17 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 703 | 101.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 710 | 101.20 | wind | 3.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 720 | 101.22 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 733 | 101.26 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 759 | 101.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 800 | 101.32 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 816 | 101.34 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 818 | 101.34 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 819 | 101.34 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 821 | 101.34 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 822 | 101.34 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 823 | 101.34 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 863 | 101.41 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 881 | 101.41 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 912 | 101.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 919 | 101.44 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 949 | 101.47 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |