Os02g0511900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-directed DNA polymerase B family protein.
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Os02g0511900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-directed DNA polymerase B family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.61 | 0.617 | 4.05 | 0.558 | 0.794 | 0.0911 | 1.08 | 2.54 | -0.234 | 19.2 | 19.75 | 1312 | -- | -- |
| 183.64 | 0.636 | 4.04 | 0.72 | 0.86 | -0.309 | 0.579 | -- | -0.193 | 20 | 21.11 | 1412 | -- | -- |
| 175.6 | 0.617 | 4.06 | 0.544 | 0.801 | 0.0928 | -- | 2.55 | -0.232 | 19.4 | 19.7 | 1313 | -- | -- |
| 184.53 | 0.637 | 4.04 | 0.7 | 0.864 | -0.333 | -- | -- | -0.195 | 20.2 | 21.11 | 1412 | -- | -- |
| 209.37 | 0.674 | 4.06 | 0.55 | -- | 0.0996 | -- | 2.34 | -0.237 | -- | 19.97 | 1331 | -- | -- |
| 187.44 | 0.642 | 4.04 | 0.762 | 0.786 | -- | 0.906 | -- | -0.183 | 18.9 | -- | -- | -- | -- |
| 189.34 | 0.644 | 4.04 | 0.743 | 0.787 | -- | -- | -- | -0.182 | 19.2 | -- | -- | -- | -- |
| 219.5 | 0.69 | 4 | 0.813 | -- | 0.224 | -- | -- | -0.124 | -- | 22.11 | 1489 | -- | -- |
| 197.3 | 0.658 | 4.06 | -- | 0.879 | -0.388 | -- | -- | -0.274 | 20.4 | 21.11 | 1412 | -- | -- |
| 222.17 | 0.696 | 4.02 | 0.729 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 203.89 | 0.668 | 4.06 | -- | 0.78 | -- | -- | -- | -0.265 | 19.3 | -- | -- | -- | -- |
| 232.79 | 0.711 | 4.04 | -- | -- | -0.314 | -- | -- | -0.397 | -- | 20.1 | 2271 | -- | -- |
| 236.18 | 0.717 | 4.04 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.59 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 2 | 168.78 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 3 | 168.78 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 10 | 168.82 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 18 | 169.24 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 19 | 169.40 | wind | 5 | 10 | < th | dose independent | rect. | 11 | 4 |
| 20 | 169.49 | wind | 9 | 30 | < th | dose dependent | rect. | 11 | 15 |
| 21 | 169.56 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 43 | 170.10 | radiation | 30 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 45 | 170.13 | radiation | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 61 | 170.16 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 67 | 170.21 | wind | 7 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 84 | 170.31 | wind | 5 | 30 | < th | dose independent | rect. | 11 | 15 |
| 85 | 170.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 87 | 170.34 | wind | 5 | 270 | < th | dose independent | rect. | 11 | 1 |
| 92 | 170.48 | wind | 7 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 93 | 170.48 | wind | 7 | 30 | < th | dose dependent | rect. | 11 | 4 |
| 95 | 170.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 100 | 170.59 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 101 | 170.59 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 105 | 170.64 | wind | 7 | 270 | < th | dose dependent | rect. | 9 | 3 |
| 107 | 170.66 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 112 | 170.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 118 | 170.78 | radiation | 30 | 4320 | < th | dose dependent | rect. | 15 | 18 |
| 120 | 170.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 148 | 170.90 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 153 | 170.92 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 163 | 170.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 165 | 170.98 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 170 | 171.02 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 178 | 171.06 | wind | 3 | 270 | < th | dose independent | rect. | 8 | 15 |
| 186 | 171.09 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 187 | 171.09 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 202 | 171.11 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 205 | 171.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 210 | 171.15 | radiation | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 234 | 171.21 | wind | 7 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 268 | 171.28 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 327 | 171.44 | wind | 7 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 334 | 171.46 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 361 | 171.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 400 | 171.65 | humidity | 80 | 14400 | > th | dose dependent | sin | 8 | NA |
| 435 | 171.73 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 453 | 171.76 | radiation | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 469 | 171.79 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 470 | 171.79 | radiation | 20 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 484 | 171.82 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 490 | 171.84 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 525 | 171.90 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 531 | 171.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 579 | 171.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 586 | 171.96 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 642 | 172.00 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 644 | 172.00 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 6 |
| 646 | 172.00 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 648 | 172.01 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 655 | 172.01 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 667 | 172.01 | radiation | 1 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 733 | 172.05 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 745 | 172.07 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 768 | 172.09 | radiation | 1 | 4320 | > th | dose dependent | sin | 12 | NA |
| 800 | 172.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 811 | 172.13 | humidity | 50 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 837 | 172.16 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 915 | 172.22 | wind | 5 | 10 | < th | dose independent | rect. | 11 | 1 |
| 944 | 172.25 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 989 | 172.27 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 2 |