Os02g0507400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF493 family protein.
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Os02g0507400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF493 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.57 | 0.392 | 10.2 | -0.411 | 4.19 | 2.32 | 1.23 | 1.01 | 0.0218 | 16.9 | 25.2 | 7 | 2.17 | -- |
| 70.47 | 0.394 | 10.2 | -0.29 | 4.19 | 2.33 | 0.679 | -- | 0.0532 | 16.9 | 25.2 | 4 | 2.04 | -- |
| 71.65 | 0.397 | 10.2 | -0.301 | 4.2 | 2.35 | -- | 0.136 | 0.0564 | 16.9 | 25.2 | 7 | 2.17 | -- |
| 71.65 | 0.397 | 10.2 | -0.284 | 4.2 | 2.36 | -- | -- | 0.0606 | 16.9 | 25.2 | 4 | 2.04 | -- |
| 828.29 | 1.35 | 10.3 | -0.839 | -- | -0.816 | -- | -0.256 | -0.532 | -- | 25.2 | 7 | 2.17 | -- |
| 135.78 | 0.546 | 10.3 | -0.632 | 3.66 | -- | 1.06 | -- | -0.327 | 17.3 | -- | -- | -- | -- |
| 138.57 | 0.551 | 10.3 | -0.633 | 3.67 | -- | -- | -- | -0.322 | 17.3 | -- | -- | -- | -- |
| 141.64 | 0.554 | 10.2 | -0.626 | -- | -3.64 | -- | -- | -0.321 | -- | 527.1 | 33 | 0.946 | -- |
| 73.65 | 0.402 | 10.2 | -- | 4.22 | 2.45 | -- | -- | 0.103 | 16.9 | 25.16 | 3 | 1.99 | -- |
| 839.73 | 1.35 | 10.2 | -0.759 | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
| 149.12 | 0.571 | 10.3 | -- | 3.68 | -- | -- | -- | -0.251 | 17.3 | -- | -- | -- | -- |
| 150.08 | 0.572 | 10.2 | -- | -- | -3.67 | -- | -- | -0.254 | -- | 2065 | 10 | 0.726 | -- |
| 854.93 | 1.36 | 10.2 | -- | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 5 | 65.42 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 24 | 69.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 27 | 69.63 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 7 |
| 32 | 69.91 | temperature | 25 | 10 | < th | dose dependent | sin | 8 | NA |
| 33 | 70.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 8 |
| 37 | 70.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 62 | 72.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 12 |
| 65 | 72.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 96 | 73.95 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 119 | 74.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 133 | 74.57 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 20 |
| 173 | 75.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 175 | 75.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 176 | 75.84 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 231 | 76.87 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 20 |
| 369 | 79.64 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 447 | 80.69 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 506 | 81.42 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 5 |
| 554 | 82.12 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 3 |
| 568 | 82.33 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 600 | 82.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 606 | 83.10 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 608 | 83.14 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 5 |
| 633 | 83.41 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 698 | 84.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 793 | 84.99 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 838 | 85.35 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 7 |
| 845 | 85.38 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 10 |
| 921 | 86.01 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 12 |