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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0505700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.038) R2 : 0.139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.79 (0.331) R2dE : 0.13 R2E : 0.132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.126 (0.0802) R2dN8 : 0.00611 R2N8 : 0.00838
σ : 0.714
deviance : 234.96
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.924
memory length : 14
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 0.817

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.5 0.707 2.85 0.145 0.0016 4.42 -0.908 10 -0.131 22.6 1.02 11 5.03 1.03
254.71 0.743 2.85 0.177 0.0016 4.42 -0.994 -- -0.124 22.2 1.02 11 5.03 1.03
229.16 0.705 2.85 0.173 0.00654 4.4 -- 9.62 -0.119 21.1 1.023 11 5.03 0.966
248.58 0.734 2.78 0.373 0.128 3.61 -- -- -0.0129 19.5 1.02 11 5.03 0.95
229.14 0.705 2.85 0.18 -- 4.42 -- 9.74 -0.126 -- 1.022 11 5.03 0.967
266.14 0.765 2.84 0.0652 0.0672 -- 1.01 -- -0.166 9.3 -- -- -- --
268.86 0.768 2.84 0.0962 0.148 -- -- -- -0.168 5.33 -- -- -- --
239.7 0.721 2.81 0.391 -- 3.64 -- -- -0.0381 -- 1.014 11 5.02 0.867
236.86 0.717 2.84 -- 0.00129 2.8 -- -- -0.143 6.57 0.9559 11 5.02 0.864
270.01 0.768 2.84 0.101 -- -- -- -- -0.164 -- -- -- -- --
269.11 0.767 2.84 -- 0.15 -- -- -- -0.179 5.31 -- -- -- --
234.96 0.714 2.83 -- -- 2.79 -- -- -0.126 -- 0.924 14 5.02 0.817
270.28 0.767 2.84 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.86 radiation 1.0 10 < th dose independent rect. 5 1
3 238.45 wind 1.0 30 < th dose independent rect. 13 2
5 238.48 wind 1.0 30 < th dose dependent rect. 13 1
15 241.97 radiation 1.0 10 < th dose dependent rect. 5 1
17 242.95 temperature 30.0 10 > th dose independent rect. 13 1
29 246.71 precipitation 0.1 270 > th dose independent rect. 2 1
30 246.71 precipitation 0.1 270 > th dose dependent rect. 2 1
66 250.39 wind 1.0 10 < th dose independent rect. 6 1
97 252.11 wind 1.0 30 < th dose dependent sin 23 NA
98 252.22 radiation 20.0 10 > th dose independent rect. 13 21
100 252.25 wind 1.0 90 < th dose dependent rect. 6 8
102 252.35 wind 1.0 90 < th dose dependent rect. 6 11
103 252.36 precipitation 0.1 720 > th dose independent rect. 24 1
104 252.36 precipitation 0.1 720 > th dose dependent rect. 24 1
121 252.77 precipitation 0.1 720 > th dose independent rect. 23 4
122 252.77 precipitation 0.1 720 > th dose dependent rect. 23 4
134 252.98 wind 1.0 30 < th dose independent sin 0 NA
162 253.77 temperature 25.0 10 > th dose independent rect. 21 1
166 253.80 humidity 90.0 90 > th dose independent rect. 9 1
167 253.80 humidity 90.0 90 > th dose dependent rect. 9 1
192 254.09 wind 1.0 30 < th dose independent rect. 6 9
202 254.19 atmosphere 1005.0 10 < th dose dependent rect. 5 1
203 254.20 precipitation 0.1 1440 < th dose independent rect. 24 2
204 254.20 precipitation 0.1 1440 < th dose dependent rect. 24 2
224 254.53 temperature 30.0 10 > th dose dependent rect. 13 1
250 255.04 radiation 20.0 10 > th dose independent rect. 13 1
276 255.22 wind 1.0 30 < th dose independent rect. 4 11
284 255.26 wind 1.0 30 > th dose independent sin 23 NA
327 255.54 wind 1.0 1440 < th dose dependent rect. 13 1
378 255.78 atmosphere 1000.0 30 > th dose independent rect. 13 1
393 255.93 humidity 90.0 10 < th dose independent rect. 13 1
413 256.08 wind 1.0 1440 < th dose independent rect. 13 1
432 256.15 wind 1.0 10 < th dose dependent rect. 6 1
433 256.17 humidity 70.0 10 < th dose independent rect. 13 1
492 256.44 radiation 10.0 10 > th dose dependent rect. 13 21
494 256.46 wind 7.0 90 < th dose dependent rect. 12 11
497 256.50 humidity 90.0 270 > th dose dependent rect. 4 5
512 256.59 humidity 90.0 270 > th dose dependent rect. 4 3
513 256.60 atmosphere 1000.0 90 > th dose independent rect. 12 22
519 256.62 wind 1.0 1440 > th dose independent rect. 13 1
536 256.69 wind 1.0 1440 < th dose independent rect. 13 3
537 256.69 wind 5.0 90 < th dose independent rect. 12 22
538 256.70 humidity 90.0 270 > th dose dependent rect. 4 12
539 256.71 precipitation 0.1 720 < th dose independent rect. 21 15
540 256.71 precipitation 0.1 720 < th dose dependent rect. 21 15
542 256.72 wind 5.0 90 < th dose independent rect. 12 11
571 256.86 temperature 25.0 10 > th dose dependent rect. 21 1
614 257.01 humidity 90.0 10 > th dose dependent rect. 5 3
623 257.04 wind 1.0 720 > th dose independent rect. 8 18
628 257.07 wind 1.0 720 > th dose independent rect. 24 2
630 257.08 humidity 90.0 10 > th dose dependent rect. 5 7
641 257.13 wind 1.0 14400 < th dose dependent rect. 2 2
644 257.13 humidity 90.0 10 > th dose dependent rect. 5 13
717 257.33 wind 1.0 720 > th dose independent rect. 6 20
737 257.40 wind 9.0 90 < th dose dependent rect. 12 22
745 257.44 temperature 25.0 270 > th dose dependent rect. 18 12
751 257.46 temperature 25.0 270 > th dose dependent rect. 18 4
769 257.49 temperature 25.0 90 > th dose dependent rect. 20 4
786 257.55 temperature 25.0 270 > th dose dependent rect. 18 6
791 257.58 temperature 25.0 10 > th dose independent rect. 20 4
798 257.59 wind 1.0 14400 < th dose independent rect. 2 2
809 257.65 precipitation 0.1 720 < th dose independent rect. 24 9
810 257.65 precipitation 0.1 720 < th dose dependent rect. 24 9
811 257.66 humidity 90.0 270 > th dose dependent sin 2 NA
830 257.72 humidity 90.0 10 > th dose independent rect. 5 2
837 257.74 wind 1.0 720 < th dose independent rect. 23 1
838 257.74 wind 5.0 90 < th dose independent rect. 12 13
872 257.85 radiation 20.0 10 < th dose independent sin 12 NA
877 257.86 radiation 10.0 1440 < th dose dependent rect. 7 1
881 257.90 wind 1.0 14400 > th dose independent rect. 2 2
890 257.92 atmosphere 995.0 30 > th dose dependent rect. 13 1
921 258.04 temperature 25.0 10 > th dose dependent rect. 21 3
929 258.06 temperature 25.0 90 > th dose independent rect. 20 4
935 258.09 radiation 1.0 90 > th dose independent rect. 14 22
940 258.10 temperature 25.0 10 < th dose independent rect. 5 3
943 258.11 temperature 25.0 10 < th dose independent rect. 5 1
965 258.16 radiation 1.0 30 > th dose dependent rect. 13 1
973 258.20 temperature 20.0 10 > th dose independent rect. 5 5
996 258.24 wind 1.0 90 < th dose dependent rect. 6 4
998 258.25 wind 1.0 10 > th dose independent rect. 10 10