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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0503700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.99 (0.0953) R2 : 0.662
β1 : -3.19 (0.317) R2dD : 0.185 R2D : -0.135
β2 : 2.67 (0.143) R2dC : 0.27 R2C : 0.0597
β3 : -3.78 (0.703) R2dE : 0.25 R2E : -0.554
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.8 (1.86) R2dD*E : 1.2 R2D*E : -0.349
γ1 : -0.0811 (0.135) R2dN8 : 0.000437 R2N8 : -0.199
σ : 1.05
deviance : 508.33
__
_____
C
peak time of C : 8.54
E
wheather : radiation
threshold : 9.95
memory length : 4292
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.98
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
513.24 1.06 6.98 -3.19 2.73 -3.82 0.0513 -22.9 -0.0795 8.46 9.96 4298 4.99 1.03
815.83 1.34 5.88 -1.91 2.55 1.38 -0.128 -- 1.04 8.58 9.96 4298 4.99 1.03
508.33 1.05 6.99 -3.19 2.67 -3.78 -- -22.8 -0.0811 8.54 9.95 4292 4.98 1.07
688.25 1.22 6.02 -2.23 2.4 3.84 -- -- 0.646 8.62 7.28 4394 4.1 2.06
886.24 1.39 7 -3.13 -- -3.81 -- -22.4 0.00768 -- 10 4257 4.98 1.12
855.48 1.37 5.89 -1.84 2.84 -- 0.449 -- 0.964 8.2 -- -- -- --
856.08 1.37 5.89 -1.83 2.84 -- -- -- 0.965 8.22 -- -- -- --
834.13 1.35 6.05 -2.22 -- 4.32 -- -- 0.695 -- 7.447 4751 4.05 2.06
917.37 1.42 5.84 -- 2.58 0.927 -- -- 1.2 8.66 7.28 4394 4.1 2.06
1301.78 1.69 5.96 -1.81 -- -- -- -- 0.997 -- -- -- -- --
943.97 1.44 5.84 -- 2.83 -- -- -- 1.17 8.27 -- -- -- --
977.81 1.46 6 -- -- 2.29 -- -- 1.37 -- 5.552 5026 2.78 2.31
1387.72 1.74 5.92 -- -- -- -- -- 1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 521.10 wind 9.0 43200 < th dose independent rect. 18 2
2 521.43 wind 9.0 43200 > th dose independent rect. 18 2
3 522.77 radiation 1.0 14400 < th dose dependent rect. 8 3
9 525.35 wind 9.0 43200 > th dose dependent rect. 19 1
15 526.35 radiation 1.0 14400 > th dose independent rect. 8 1
18 526.62 wind 9.0 43200 > th dose independent rect. 24 1
19 526.62 wind 9.0 43200 > th dose dependent rect. 24 1
20 526.66 radiation 1.0 14400 < th dose independent rect. 8 1
26 526.91 radiation 20.0 43200 < th dose independent rect. 6 1
27 526.91 radiation 1.0 43200 < th dose independent rect. 7 3
28 526.98 radiation 1.0 43200 > th dose independent rect. 7 3
35 527.34 radiation 20.0 43200 < th dose independent rect. 2 5
44 527.56 radiation 20.0 43200 < th dose independent rect. 19 12
53 527.74 radiation 1.0 14400 < th dose independent rect. 10 1
62 527.97 radiation 1.0 14400 < th dose dependent rect. 18 17
67 528.31 radiation 10.0 43200 > th dose dependent rect. 5 1
83 528.89 temperature 15.0 43200 < th dose independent rect. 5 2
102 529.73 temperature 15.0 43200 < th dose independent rect. 10 1
103 529.78 temperature 15.0 43200 > th dose independent rect. 10 1
112 530.48 wind 5.0 43200 < th dose independent rect. 11 9
116 530.69 temperature 15.0 43200 < th dose independent rect. 4 7
119 530.84 wind 5.0 43200 > th dose independent rect. 11 9
123 530.94 wind 5.0 43200 < th dose independent rect. 11 6
129 531.16 wind 5.0 43200 > th dose independent rect. 11 6
137 531.48 wind 7.0 43200 > th dose independent rect. 5 1
138 531.48 radiation 1.0 14400 < th dose dependent sin 9 NA
165 531.96 wind 7.0 43200 > th dose dependent rect. 5 1
178 532.17 radiation 1.0 14400 < th dose dependent rect. 22 11
246 533.01 temperature 15.0 43200 > th dose independent rect. 5 7
284 533.36 wind 5.0 43200 < th dose independent rect. 11 1
320 533.69 radiation 20.0 43200 > th dose dependent rect. 17 14
374 534.10 wind 5.0 43200 > th dose independent rect. 11 1
387 534.28 temperature 15.0 43200 > th dose independent rect. 4 13
394 534.37 temperature 15.0 43200 < th dose independent sin 2 NA
399 534.45 temperature 15.0 43200 > th dose independent rect. 6 1
408 534.55 humidity 90.0 43200 > th dose independent rect. 10 1
431 534.83 humidity 70.0 43200 > th dose independent rect. 8 1
439 534.93 radiation 1.0 43200 < th dose dependent rect. 6 11
445 535.05 humidity 90.0 43200 > th dose dependent rect. 10 1
454 535.18 wind 3.0 43200 > th dose dependent rect. 10 9
467 535.35 radiation 30.0 43200 < th dose independent rect. 16 16
479 535.47 wind 3.0 43200 > th dose dependent rect. 10 7
488 535.56 temperature 15.0 43200 > th dose independent sin 1 NA
533 535.92 radiation 40.0 43200 < th dose independent rect. 15 1
548 536.03 wind 5.0 43200 < th dose independent sin 21 NA
569 536.22 radiation 1.0 43200 > th dose independent rect. 7 10
570 536.22 radiation 1.0 43200 < th dose independent rect. 7 10
578 536.27 wind 5.0 43200 > th dose independent sin 21 NA
583 536.32 temperature 15.0 43200 > th dose independent rect. 3 20
602 536.47 wind 9.0 43200 < th dose independent rect. 5 1
605 536.48 wind 5.0 43200 < th dose independent rect. 11 14
632 536.63 temperature 15.0 43200 < th dose independent rect. 22 14
640 536.66 temperature 15.0 43200 < th dose independent rect. 22 20
661 536.79 temperature 15.0 43200 < th dose independent rect. 22 1
668 536.81 wind 5.0 43200 > th dose independent rect. 11 14
743 537.14 wind 7.0 43200 < th dose dependent rect. 11 4
759 537.23 temperature 15.0 43200 > th dose independent rect. 22 1
760 537.23 humidity 60.0 43200 > th dose independent rect. 8 4
763 537.23 temperature 15.0 43200 < th dose independent rect. 15 21
767 537.27 radiation 40.0 43200 < th dose independent rect. 15 5
791 537.41 radiation 40.0 43200 < th dose independent rect. 15 3
796 537.43 precipitation 0.1 43200 < th dose independent rect. 23 1
799 537.43 precipitation 0.1 43200 < th dose dependent rect. 23 1
802 537.44 radiation 40.0 43200 < th dose independent rect. 15 12
817 537.47 temperature 15.0 43200 < th dose independent rect. 8 23
848 537.57 temperature 15.0 43200 < th dose independent no NA NA
882 537.74 wind 7.0 43200 < th dose independent rect. 24 20
895 537.82 precipitation 0.1 43200 > th dose independent rect. 23 1
898 537.82 temperature 15.0 43200 < th dose independent rect. 22 9
903 537.82 precipitation 0.1 43200 > th dose dependent rect. 23 1
939 538.00 humidity 50.0 43200 > th dose independent rect. 12 3
944 538.01 temperature 15.0 43200 < th dose independent rect. 15 16
947 538.02 temperature 15.0 43200 > th dose independent rect. 3 1
955 538.08 humidity 50.0 43200 > th dose independent rect. 12 1
994 538.26 wind 7.0 43200 < th dose independent rect. 24 17