Os02g0502300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0502300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.38 | 0.371 | 12.4 | -0.116 | 1.21 | 0.453 | 1.46 | -0.37 | -0.0519 | 19.2 | 21.4 | 937 | -- | -- |
| 62.73 | 0.369 | 12.4 | -0.0169 | 1.21 | 0.463 | 1.37 | -- | -0.0327 | 19.2 | 21.6 | 943 | -- | -- |
| 67.68 | 0.383 | 12.4 | -0.0498 | 1.21 | 0.465 | -- | -0.0149 | -0.0353 | 19.3 | 21.4 | 881 | -- | -- |
| 67.65 | 0.383 | 12.4 | -0.0448 | 1.2 | 0.472 | -- | -- | -0.0266 | 19.2 | 21.4 | 881 | -- | -- |
| 138.03 | 0.547 | 12.4 | -0.0182 | -- | 0.732 | -- | 0.445 | -0.0916 | -- | 21.5 | 625 | -- | -- |
| 70.36 | 0.393 | 12.4 | 0.164 | 1.26 | -- | 1.35 | -- | 0.105 | 19.3 | -- | -- | -- | -- |
| 75.23 | 0.406 | 12.4 | 0.133 | 1.26 | -- | -- | -- | 0.107 | 19.4 | -- | -- | -- | -- |
| 114.86 | 0.499 | 12.4 | -0.107 | -- | 0.942 | -- | -- | -0.0584 | -- | 27.6 | 470 | -- | -- |
| 67.7 | 0.383 | 12.4 | -- | 1.2 | 0.46 | -- | -- | -0.0219 | 19.2 | 21.4 | 881 | -- | -- |
| 159.47 | 0.59 | 12.4 | 0.113 | -- | -- | -- | -- | 0.0871 | -- | -- | -- | -- | -- |
| 75.7 | 0.407 | 12.4 | -- | 1.26 | -- | -- | -- | 0.0925 | 19.4 | -- | -- | -- | -- |
| 115.08 | 0.5 | 12.4 | -- | -- | 0.94 | -- | -- | -0.0505 | -- | 27.6 | 470 | -- | -- |
| 159.81 | 0.59 | 12.4 | -- | -- | -- | -- | -- | 0.0746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 17 | 62.66 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 27 | 62.76 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 32 | 62.79 | temperature | 15 | 270 | > th | dose independent | rect. | 13 | 14 |
| 33 | 62.79 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 35 | 62.83 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 36 | 62.83 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 48 | 62.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 58 | 62.92 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 62 | 62.93 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 63 | 62.94 | wind | 9 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 68 | 62.96 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 77 | 62.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 78 | 62.99 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 86 | 63.01 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 96 | 63.04 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 103 | 63.05 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 121 | 63.09 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 125 | 63.10 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 143 | 63.14 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 187 | 63.21 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 192 | 63.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 197 | 63.23 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 274 | 63.37 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 13 |
| 294 | 63.41 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 300 | 63.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 310 | 63.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 340 | 63.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 348 | 63.48 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 352 | 63.49 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 353 | 63.49 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 354 | 63.49 | temperature | 15 | 270 | > th | dose independent | rect. | 16 | 22 |
| 372 | 63.52 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 392 | 63.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 394 | 63.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 451 | 63.65 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 453 | 63.65 | wind | 5 | 14400 | < th | dose dependent | sin | 9 | NA |
| 460 | 63.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 477 | 63.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 545 | 63.73 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 563 | 63.74 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 18 |
| 572 | 63.75 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 615 | 63.78 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 619 | 63.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 625 | 63.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 640 | 63.80 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 641 | 63.80 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 644 | 63.80 | wind | 1 | 14400 | > th | dose dependent | sin | 9 | NA |
| 657 | 63.81 | wind | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 685 | 63.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 690 | 63.83 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 22 |
| 712 | 63.84 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 729 | 63.86 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 761 | 63.88 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 14 |
| 781 | 63.89 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 831 | 63.92 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 20 |
| 855 | 63.93 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 20 |
| 857 | 63.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 894 | 63.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 927 | 63.97 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 970 | 64.00 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 12 | 5 |
| 973 | 64.00 | atmosphere | 995 | 270 | > th | dose independent | rect. | 13 | 14 |