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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0499000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0219) R2 : 0.795
β1 : -2.14 (0.0802) R2dD : 0.333 R2D : 0.251
β2 : 1.85 (0.0572) R2dC : 0.475 R2C : 0.43
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.574 (0.0467) R2dN8 : 0.091 R2N8 : 0.00119
σ : 0.412
deviance : 77.29
__
_____
C
peak time of C : 5.72
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.91 0.387 12.8 -2.08 2.07 -0.552 1.14 0.18 -0.673 5.48 89.76 27 -- --
67.94 0.384 12.8 -2.08 2.08 -0.525 1.17 -- -0.672 5.44 88.33 26 -- --
68.82 0.386 12.8 -2.14 2.05 -0.744 -- 1.77 -0.661 5.6 93.85 45 -- --
70.84 0.392 12.8 -2.07 2.08 -0.47 -- -- -0.668 5.38 84 8 -- --
155.93 0.582 12.7 -1.96 -- 1.62 -- 0.33 -0.466 -- 65.87 396 -- --
75.2 0.407 12.7 -2.15 1.85 -- 0.924 -- -0.57 5.74 -- -- -- --
77.29 0.412 12.7 -2.14 1.85 -- -- -- -0.574 5.72 -- -- -- --
153.19 0.576 12.7 -2.14 -- 1.65 -- -- -0.441 -- 64.12 409 -- --
183.08 0.63 12.7 -- 2.14 -0.738 -- -- -0.492 5.34 88.56 6 -- --
255.33 0.747 12.8 -2.08 -- -- -- -- -0.53 -- -- -- -- --
198.01 0.658 12.7 -- 1.82 -- -- -- -0.336 5.78 -- -- -- --
270.91 0.767 12.7 -- -- 1.87 -- -- -0.325 -- 45.8 434 -- --
369.66 0.897 12.7 -- -- -- -- -- -0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.56 atmosphere 995.0 270 > th dose independent rect. 13 2
2 52.70 precipitation 0.1 270 < th dose independent rect. 15 22
3 52.70 precipitation 0.1 270 < th dose dependent rect. 15 22
4 52.92 wind 9.0 270 < th dose independent rect. 13 2
6 53.08 atmosphere 995.0 270 > th dose dependent rect. 13 2
7 53.16 temperature 10.0 270 > th dose independent rect. 13 2
9 53.16 atmosphere 1010.0 270 < th dose independent rect. 13 2
11 53.16 temperature 10.0 270 > th dose independent rect. 15 22
13 53.35 precipitation 0.1 270 < th dose independent rect. 13 2
14 53.35 precipitation 0.1 270 < th dose dependent rect. 13 2
15 53.57 atmosphere 995.0 90 > th dose independent rect. 13 4
16 53.65 wind 1.0 270 > th dose independent rect. 13 2
17 53.67 wind 9.0 90 < th dose independent rect. 13 4
21 53.85 atmosphere 995.0 90 > th dose dependent rect. 13 4
22 53.91 precipitation 0.1 270 < th dose independent rect. 16 20
23 53.91 precipitation 0.1 270 < th dose dependent rect. 16 20
31 54.10 wind 1.0 90 > th dose independent rect. 13 4
32 54.10 temperature 10.0 90 > th dose independent rect. 13 4
34 54.10 atmosphere 1010.0 90 < th dose independent rect. 13 4
36 54.10 temperature 10.0 90 > th dose independent rect. 17 20
40 54.24 radiation 40.0 90 < th dose independent rect. 13 4
42 54.32 precipitation 0.1 90 < th dose independent rect. 13 4
43 54.32 precipitation 0.1 90 < th dose dependent rect. 13 4
46 54.48 wind 9.0 90 < th dose independent rect. 17 20
67 54.64 atmosphere 995.0 90 > th dose independent rect. 17 20
69 54.75 wind 9.0 270 < th dose independent rect. 15 22
77 55.11 atmosphere 995.0 10 > th dose dependent rect. 14 4
86 55.19 humidity 50.0 90 > th dose independent rect. 17 20
97 55.31 radiation 40.0 10 < th dose independent rect. 13 5
98 55.32 precipitation 0.1 270 < th dose independent rect. 2 10
99 55.32 precipitation 0.1 270 < th dose dependent rect. 2 10
103 55.34 temperature 30.0 90 < th dose independent rect. 13 4
105 55.41 radiation 1.0 270 > th dose independent rect. 13 2
113 55.49 atmosphere 995.0 270 > th dose independent rect. 11 6
114 55.50 humidity 50.0 270 > th dose independent rect. 13 2
128 55.60 humidity 60.0 90 > th dose independent rect. 13 4
129 55.60 atmosphere 995.0 10 > th dose independent rect. 14 4
133 55.71 precipitation 0.1 10 < th dose independent rect. 18 20
134 55.71 precipitation 0.1 10 < th dose dependent rect. 18 20
137 55.77 temperature 30.0 10 < th dose independent rect. 13 5
140 55.78 wind 9.0 270 < th dose dependent rect. 13 2
141 55.81 humidity 90.0 270 < th dose independent rect. 13 2
142 55.81 humidity 50.0 90 > th dose dependent rect. 13 4
146 55.87 wind 9.0 270 < th dose independent rect. 12 14
148 55.93 wind 9.0 10 < th dose independent rect. 14 4
153 56.02 humidity 90.0 90 < th dose independent rect. 13 4
190 56.27 temperature 10.0 270 > th dose independent rect. 2 10
191 56.27 atmosphere 995.0 270 > th dose independent rect. 2 10
192 56.27 atmosphere 1015.0 270 < th dose independent rect. 2 10
193 56.27 temperature 10.0 270 > th dose independent rect. 12 14
211 56.36 precipitation 0.1 10 < th dose independent rect. 14 4
212 56.36 precipitation 0.1 10 < th dose dependent rect. 14 4
213 56.38 temperature 10.0 10 > th dose independent rect. 14 4
215 56.38 atmosphere 1010.0 10 < th dose independent rect. 14 4
218 56.38 temperature 10.0 10 > th dose independent rect. 18 20
221 56.45 wind 1.0 90 > th dose independent rect. 17 20
222 56.47 atmosphere 995.0 10 > th dose independent rect. 18 20
247 56.63 wind 1.0 10 > th dose independent rect. 14 4
262 56.75 wind 9.0 270 < th dose independent rect. 2 10
264 56.76 wind 9.0 10 < th dose independent rect. 18 20
283 56.83 radiation 40.0 90 < th dose dependent rect. 13 4
300 57.01 wind 9.0 90 < th dose independent rect. 1 16
305 57.06 atmosphere 1015.0 90 < th dose independent rect. 17 20
321 57.17 temperature 10.0 270 > th dose dependent rect. 13 2
332 57.37 atmosphere 995.0 270 > th dose independent rect. 12 15
340 57.50 atmosphere 995.0 90 > th dose independent rect. 1 16
353 57.63 radiation 40.0 90 < th dose dependent rect. 15 2
359 57.68 temperature 10.0 90 > th dose dependent rect. 13 4
361 57.71 radiation 40.0 270 < th dose independent rect. 17 18
363 57.71 wind 1.0 90 > th dose dependent rect. 13 4
364 57.72 radiation 40.0 90 < th dose dependent rect. 17 8
367 57.74 temperature 10.0 90 > th dose independent rect. 17 8
368 57.74 radiation 20.0 90 < th dose independent rect. 17 8
371 57.74 temperature 10.0 90 > th dose independent rect. 1 16
372 57.74 atmosphere 1015.0 90 < th dose independent rect. 1 16
383 57.79 wind 9.0 90 < th dose independent rect. 17 8
387 57.81 humidity 60.0 10 > th dose independent rect. 14 4
402 57.86 humidity 50.0 270 > th dose independent rect. 3 9
421 57.99 temperature 10.0 1440 > th dose independent rect. 14 5
425 57.99 temperature 10.0 1440 > th dose independent rect. 19 19
428 57.99 atmosphere 995.0 1440 > th dose independent rect. 19 19
436 58.04 humidity 50.0 90 > th dose independent rect. 17 7
452 58.08 humidity 50.0 270 > th dose dependent rect. 21 10
466 58.18 humidity 90.0 10 < th dose independent rect. 14 4
471 58.20 wind 9.0 10 < th dose independent rect. 1 17
479 58.25 precipitation 0.1 270 < th dose independent rect. 16 7
480 58.25 humidity 90.0 10 < th dose independent rect. 18 20
481 58.25 precipitation 0.1 270 < th dose dependent rect. 16 7
506 58.35 wind 1.0 270 > th dose independent rect. 16 7
510 58.36 atmosphere 995.0 10 > th dose independent rect. 1 17
515 58.38 atmosphere 995.0 90 > th dose independent rect. 17 7
529 58.43 radiation 40.0 10 < th dose dependent rect. 13 5
530 58.44 humidity 60.0 10 > th dose independent rect. 18 7
550 58.51 precipitation 0.1 270 < th dose independent rect. 12 15
552 58.51 precipitation 0.1 270 < th dose dependent rect. 12 15
555 58.53 temperature 30.0 30 < th dose independent rect. 18 19
567 58.57 humidity 50.0 10 > th dose dependent rect. 14 3
568 58.58 radiation 1.0 270 > th dose independent rect. 11 6
569 58.58 radiation 40.0 270 < th dose independent rect. 16 20
573 58.59 radiation 10.0 10 < th dose dependent rect. 18 7
592 58.66 precipitation 0.1 90 < th dose independent rect. 24 17
594 58.66 precipitation 0.1 90 < th dose dependent rect. 24 17
595 58.67 precipitation 0.1 10 < th dose independent rect. 18 7
598 58.67 precipitation 0.1 10 < th dose dependent rect. 18 7
618 58.72 radiation 1.0 10 < th dose independent rect. 18 7
625 58.73 humidity 50.0 10 > th dose dependent rect. 13 5
631 58.75 temperature 10.0 10 > th dose independent rect. 18 7
633 58.75 radiation 20.0 10 < th dose independent rect. 18 7
636 58.75 temperature 10.0 10 > th dose independent rect. 1 17
638 58.75 atmosphere 1015.0 10 < th dose independent rect. 1 17
671 58.83 atmosphere 995.0 10 > th dose independent rect. 18 7
782 59.23 temperature 10.0 10 > th dose dependent rect. 14 4
817 59.39 atmosphere 1015.0 90 < th dose independent rect. 17 7
957 59.73 radiation 1.0 90 > th dose independent rect. 18 19
961 59.74 wind 1.0 10 > th dose dependent rect. 14 4