Os02g0498600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0498600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.02 | 0.393 | 12.1 | -1.04 | 1.5 | 0.9 | -1.17 | -1.17 | -0.976 | 19.9 | 25.5 | 1227 | -- | -- |
| 71.32 | 0.393 | 12.1 | -0.701 | 1.48 | 0.81 | -1.25 | -- | -0.865 | 19.9 | 25.4 | 1197 | -- | -- |
| 73.85 | 0.4 | 12.1 | -1.06 | 1.49 | 0.889 | -- | -1.33 | -0.988 | 20 | 25.4 | 1226 | -- | -- |
| 75.61 | 0.405 | 12.1 | -0.672 | 1.5 | 0.813 | -- | -- | -0.867 | 20 | 25.45 | 1221 | -- | -- |
| 128.65 | 0.528 | 12.1 | -1.22 | -- | 1.37 | -- | -1.43 | -1.19 | -- | 25.2 | 652 | -- | -- |
| 89.47 | 0.443 | 12 | -0.471 | 1.52 | -- | -1.05 | -- | -0.579 | 20.3 | -- | -- | -- | -- |
| 92.81 | 0.451 | 12 | -0.441 | 1.52 | -- | -- | -- | -0.58 | 20.4 | -- | -- | -- | -- |
| 134.23 | 0.54 | 12.1 | -0.846 | -- | 1.33 | -- | -- | -1.09 | -- | 25.26 | 641 | -- | -- |
| 87.15 | 0.435 | 12 | -- | 1.47 | 0.729 | -- | -- | -0.777 | 20 | 25.4 | 1189 | -- | -- |
| 221.22 | 0.695 | 12 | -0.45 | -- | -- | -- | -- | -0.596 | -- | -- | -- | -- | -- |
| 97.94 | 0.463 | 12 | -- | 1.52 | -- | -- | -- | -0.531 | 20.4 | -- | -- | -- | -- |
| 152.09 | 0.574 | 12 | -- | -- | 1.2 | -- | -- | -0.955 | -- | 25.23 | 620 | -- | -- |
| 226.55 | 0.703 | 11.9 | -- | -- | -- | -- | -- | -0.546 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.21 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 2 | 68.66 | temperature | 20.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 68.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 4 | 68.90 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 6 | 69.04 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 7 | 69.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 14 | 69.19 | wind | 9.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 19 | 69.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 24 | 69.32 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 25 | 69.33 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 27 | 69.34 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 28 | 69.38 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 29 | 69.40 | wind | 9.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 37 | 69.49 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 41 | 69.56 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 45 | 69.59 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 50 | 69.64 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 58 | 69.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 70 | 69.80 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 72 | 69.85 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 16 |
| 78 | 69.92 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 81 | 69.95 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 92 | 70.00 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 110 | 70.08 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 111 | 70.08 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 116 | 70.09 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 123 | 70.13 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 124 | 70.15 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 10 | 15 |
| 144 | 70.21 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 159 | 70.24 | wind | 9.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 166 | 70.26 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 173 | 70.28 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 177 | 70.29 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 260 | 70.49 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 264 | 70.50 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 275 | 70.50 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 277 | 70.50 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 280 | 70.51 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 289 | 70.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 296 | 70.52 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 303 | 70.53 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 337 | 70.57 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 351 | 70.57 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 352 | 70.58 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 358 | 70.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 383 | 70.61 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 391 | 70.61 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 392 | 70.61 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 12 | 13 |
| 410 | 70.63 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 425 | 70.64 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 19 |
| 427 | 70.64 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 454 | 70.67 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 459 | 70.67 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 460 | 70.67 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 477 | 70.67 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 490 | 70.68 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 517 | 70.70 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 541 | 70.71 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 548 | 70.72 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 642 | 70.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 647 | 70.78 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 649 | 70.78 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 671 | 70.80 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 680 | 70.80 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 686 | 70.81 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 714 | 70.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 720 | 70.83 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 723 | 70.83 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 725 | 70.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 747 | 70.85 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 751 | 70.85 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 776 | 70.87 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 783 | 70.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 790 | 70.88 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 815 | 70.90 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 830 | 70.90 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 833 | 70.90 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 1 | 21 |
| 853 | 70.91 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 855 | 70.92 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 906 | 70.94 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 929 | 70.95 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 972 | 70.97 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 22 |