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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0496300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.91 (0.0322) R2 : 0.933
β1 : 0.772 (0.118) R2dD : 0.00656 R2D : -0.225
β2 : 1.49 (0.0766) R2dC : 0.0557 R2C : -0.193
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.1 (0.0687) R2dN8 : 1.09 R2N8 : 0.87
σ : 0.606
deviance : 167.22
__
_____
C
peak time of C : 23.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.5 0.573 8.8 0.394 1.49 -1.41 -0.625 -3.67 -4.99 23 4.492 9025 -- --
155.49 0.581 8.89 0.421 1.52 -0.776 -0.666 -- -5.03 22.9 5.498 5086 -- --
149.93 0.57 8.79 0.463 1.49 -1.33 -- -3.48 -5 23.1 4.488 10349 -- --
157.32 0.584 8.9 0.431 1.53 -0.744 -- -- -5.03 23 5.478 5088 -- --
284.79 0.786 8.77 0.456 -- -1.43 -- -3.54 -5.02 -- 4.501 10218 -- --
166.01 0.604 8.91 0.75 1.48 -- -0.537 -- -5.1 23.1 -- -- -- --
167.22 0.606 8.91 0.772 1.49 -- -- -- -5.1 23.2 -- -- -- --
292.04 0.796 8.87 0.494 -- -0.827 -- -- -5.1 -- 5.8 4586 -- --
162.51 0.594 8.9 -- 1.55 -0.952 -- -- -5.01 23 5.58 5100 -- --
304.96 0.816 8.87 0.807 -- -- -- -- -5.09 -- -- -- -- --
182.92 0.633 8.93 -- 1.49 -- -- -- -5.19 23.2 -- -- -- --
297.37 0.803 8.93 -- -- -0.793 -- -- -5.35 -- 6.664 47520 -- --
322.14 0.838 8.89 -- -- -- -- -- -5.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.54 temperature 20.0 720 > th dose dependent rect. 1 1
3 145.03 wind 7.0 14400 > th dose dependent rect. 14 1
4 145.26 radiation 1.0 14400 < th dose dependent rect. 3 1
6 145.39 wind 9.0 14400 < th dose independent rect. 14 1
7 145.88 radiation 1.0 14400 < th dose dependent rect. 23 1
8 145.93 atmosphere 1000.0 30 > th dose independent rect. 3 23
10 146.26 wind 9.0 14400 > th dose dependent sin 12 NA
11 146.32 wind 9.0 14400 > th dose independent rect. 14 1
13 146.33 wind 9.0 1440 < th dose independent rect. 3 1
14 146.33 temperature 10.0 1440 > th dose independent rect. 3 1
17 146.33 temperature 30.0 1440 < th dose independent rect. 3 1
21 146.33 humidity 50.0 1440 > th dose independent rect. 3 1
30 146.33 atmosphere 995.0 1440 > th dose independent rect. 3 1
31 146.33 radiation 1.0 1440 < th dose independent rect. 3 1
51 146.33 temperature 10.0 1440 > th dose independent rect. 4 23
54 146.33 radiation 1.0 1440 < th dose dependent rect. 3 1
62 146.34 radiation 30.0 43200 < th dose dependent rect. 3 1
74 146.58 wind 9.0 14400 > th dose dependent rect. 17 12
82 146.73 wind 9.0 14400 > th dose dependent rect. 14 15
84 146.76 wind 9.0 14400 > th dose dependent rect. 17 8
93 146.84 wind 5.0 14400 > th dose independent rect. 20 21
95 146.86 atmosphere 1005.0 30 > th dose dependent rect. 2 1
96 146.86 wind 9.0 14400 > th dose dependent rect. 14 11
104 146.93 wind 9.0 14400 < th dose independent rect. 18 10
105 146.94 wind 9.0 14400 > th dose dependent rect. 14 7
107 146.95 wind 9.0 14400 < th dose independent rect. 18 3
109 146.98 atmosphere 1005.0 30 > th dose independent rect. 2 1
110 147.03 wind 3.0 30 < th dose dependent rect. 2 1
111 147.04 wind 1.0 30 < th dose independent rect. 2 1
112 147.04 wind 5.0 14400 < th dose independent rect. 20 21
113 147.06 wind 9.0 14400 > th dose independent rect. 18 3
114 147.06 wind 9.0 14400 > th dose independent rect. 18 10
116 147.08 wind 9.0 14400 > th dose independent rect. 18 7
126 147.14 temperature 20.0 30 > th dose dependent rect. 2 1
131 147.16 wind 9.0 14400 < th dose independent rect. 18 5
138 147.20 wind 5.0 14400 > th dose independent rect. 23 19
139 147.21 wind 9.0 14400 < th dose independent rect. 18 7
140 147.22 wind 5.0 14400 > th dose independent rect. 24 22
178 147.40 wind 5.0 14400 < th dose independent rect. 23 19
182 147.42 temperature 20.0 720 > th dose dependent rect. 23 4
193 147.46 wind 5.0 14400 < th dose independent rect. 23 17
205 147.50 wind 5.0 14400 > th dose independent rect. 10 22
215 147.52 wind 5.0 14400 < th dose independent rect. 24 22
231 147.56 wind 9.0 14400 > th dose independent sin 12 NA
232 147.56 temperature 25.0 90 > th dose independent rect. 2 1
236 147.56 temperature 30.0 720 < th dose independent rect. 16 14
240 147.57 temperature 10.0 30 > th dose independent rect. 2 1
243 147.57 temperature 30.0 30 < th dose independent rect. 2 1
244 147.57 humidity 50.0 30 > th dose independent rect. 2 1
248 147.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
250 147.57 radiation 1.0 30 < th dose independent rect. 2 1
255 147.57 precipitation 0.1 30 < th dose independent rect. 2 1
260 147.57 temperature 10.0 30 > th dose independent rect. 3 23
261 147.57 radiation 1.0 30 < th dose dependent rect. 2 1
266 147.57 precipitation 0.1 30 < th dose dependent rect. 2 1
297 147.66 wind 5.0 14400 > th dose independent no NA NA
298 147.66 humidity 50.0 30 > th dose dependent rect. 2 1
315 147.70 humidity 50.0 720 > th dose independent rect. 13 17
316 147.70 wind 5.0 14400 > th dose dependent rect. 11 21
335 147.74 wind 5.0 14400 > th dose dependent rect. 13 21
340 147.75 wind 5.0 14400 > th dose independent rect. 13 23
343 147.75 wind 5.0 14400 > th dose dependent rect. 20 22
345 147.76 wind 5.0 14400 > th dose independent rect. 2 23
365 147.83 wind 9.0 14400 < th dose independent rect. 18 15
371 147.84 wind 5.0 14400 > th dose dependent rect. 17 23
372 147.85 wind 9.0 14400 < th dose independent sin 12 NA
380 147.86 wind 5.0 14400 > th dose dependent rect. 23 23
394 147.89 wind 5.0 14400 > th dose dependent rect. 20 20
396 147.90 wind 5.0 14400 > th dose independent rect. 5 23
413 147.93 wind 5.0 14400 < th dose independent rect. 10 23
450 148.02 wind 7.0 43200 < th dose independent rect. 13 6
459 148.04 wind 5.0 14400 < th dose independent no NA NA
463 148.05 temperature 30.0 720 > th dose independent rect. 13 1
471 148.06 temperature 30.0 720 < th dose independent rect. 14 16
493 148.11 wind 5.0 14400 > th dose dependent no NA NA
495 148.11 wind 5.0 14400 > th dose dependent rect. 2 23
504 148.13 radiation 1.0 14400 < th dose dependent rect. 1 1
517 148.15 wind 5.0 14400 < th dose independent rect. 2 23
520 148.15 temperature 30.0 30 < th dose dependent rect. 2 1
533 148.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
537 148.18 wind 5.0 14400 < th dose independent rect. 13 23
550 148.21 wind 7.0 43200 > th dose independent rect. 13 6
562 148.25 radiation 20.0 43200 < th dose independent rect. 17 15
564 148.25 radiation 20.0 43200 > th dose dependent rect. 16 16
570 148.26 wind 5.0 14400 < th dose independent rect. 15 23
578 148.28 temperature 20.0 270 > th dose dependent rect. 23 9
583 148.30 wind 5.0 14400 > th dose independent sin 2 NA
587 148.30 wind 5.0 14400 < th dose independent rect. 5 23
600 148.33 wind 7.0 14400 < th dose independent rect. 13 21
610 148.35 radiation 20.0 43200 < th dose independent rect. 3 5
620 148.36 radiation 20.0 43200 < th dose independent rect. 20 12
624 148.37 atmosphere 1005.0 14400 < th dose independent rect. 5 1
625 148.37 radiation 20.0 43200 < th dose independent rect. 5 3
654 148.43 radiation 20.0 43200 > th dose dependent rect. 6 2
669 148.44 wind 5.0 14400 < th dose independent sin 2 NA
694 148.49 wind 9.0 30 < th dose independent rect. 3 23
718 148.54 wind 1.0 10 > th dose independent rect. 20 10
723 148.55 atmosphere 1005.0 14400 > th dose independent rect. 5 1
763 148.64 wind 9.0 14400 > th dose independent rect. 14 15
798 148.69 temperature 15.0 720 > th dose dependent rect. 15 7
802 148.70 atmosphere 1005.0 14400 < th dose dependent rect. 2 1
815 148.72 wind 9.0 14400 > th dose independent rect. 14 11
819 148.72 temperature 10.0 720 > th dose dependent rect. 15 12
834 148.75 wind 5.0 14400 > th dose dependent rect. 11 11
853 148.79 radiation 1.0 14400 < th dose dependent rect. 23 4
854 148.79 temperature 15.0 720 > th dose dependent rect. 15 9
873 148.83 wind 1.0 30 > th dose independent rect. 2 1
874 148.83 humidity 90.0 43200 < th dose independent rect. 1 1
878 148.84 humidity 90.0 43200 > th dose independent rect. 1 2
880 148.84 wind 9.0 14400 < th dose independent rect. 14 15
897 148.87 atmosphere 995.0 14400 > th dose independent rect. 7 7
975 148.96 temperature 20.0 90 > th dose dependent rect. 1 8
978 148.97 humidity 90.0 43200 < th dose independent rect. 21 8