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Os02g0496100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0128) R2 : 0.0709
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.159 (0.0269) R2dN8 : 0.0915 R2N8 : 0.0709
σ : 0.241
deviance : 26.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.9 0.204 10.6 0.468 0.208 0.135 -0.466 -1.25 -0.0832 17.7 67.42 807 -- --
21.04 0.214 10.6 0.366 0.158 0.115 -0.463 -- -0.1 15.7 68.61 1375 -- --
19.17 0.204 10.6 0.484 0.176 0.169 -- -1.2 -0.0837 18 65.48 1039 -- --
21.42 0.216 10.6 0.36 0.237 0.132 -- -- -0.104 17.7 69.97 666 -- --
20.7 0.212 10.6 0.491 -- 0.189 -- -1.23 -0.0778 -- 65.09 1143 -- --
21.24 0.216 10.6 0.367 0.167 -- -0.446 -- -0.113 15.7 -- -- -- --
21.67 0.218 10.6 0.36 0.178 -- -- -- -0.115 16.9 -- -- -- --
22.71 0.223 10.6 0.357 -- -0.104 -- -- -0.126 -- 65.09 1143 -- --
24.87 0.232 10.6 -- 0.162 0.122 -- -- -0.142 17 72.05 1358 -- --
23.33 0.226 10.6 0.353 -- -- -- -- -0.12 -- -- -- -- --
25.08 0.234 10.6 -- 0.171 -- -- -- -0.155 16.9 -- -- -- --
26.05 0.238 10.6 -- -- -0.11 -- -- -0.162 -- 58.62 1267 -- --
26.63 0.241 10.6 -- -- -- -- -- -0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.12 temperature 20.0 10 > th dose independent rect. 5 16
5 18.39 atmosphere 1005.0 10 > th dose independent rect. 5 2
9 18.47 temperature 10.0 43200 > th dose independent rect. 8 10
14 18.68 atmosphere 1010.0 10 < th dose independent rect. 5 2
15 18.70 humidity 50.0 14400 > th dose independent rect. 19 13
17 18.74 humidity 90.0 30 < th dose independent rect. 17 14
19 18.76 humidity 70.0 720 > th dose dependent rect. 19 21
23 18.78 temperature 10.0 10 > th dose dependent rect. 5 16
25 18.79 temperature 15.0 1440 > th dose independent rect. 24 3
26 18.79 atmosphere 1010.0 10 < th dose independent rect. 5 16
32 18.80 humidity 50.0 43200 > th dose independent rect. 22 6
45 18.83 humidity 50.0 43200 > th dose independent rect. 24 4
46 18.83 temperature 10.0 10 > th dose dependent rect. 5 2
47 18.83 temperature 25.0 720 < th dose dependent rect. 4 12
61 18.85 atmosphere 995.0 10 > th dose dependent rect. 5 2
74 18.87 wind 3.0 10 < th dose independent rect. 5 2
76 18.87 atmosphere 1010.0 270 < th dose independent rect. 2 19
77 18.87 wind 7.0 10 < th dose dependent rect. 5 2
79 18.87 temperature 25.0 720 < th dose dependent rect. 5 10
90 18.88 humidity 70.0 720 > th dose dependent sin 1 NA
92 18.88 radiation 1.0 10 < th dose dependent rect. 21 20
98 18.89 temperature 15.0 90 > th dose independent rect. 17 14
99 18.89 radiation 1.0 4320 < th dose dependent rect. 7 10
117 18.91 radiation 1.0 10 > th dose independent rect. 5 2
120 18.91 atmosphere 1005.0 270 > th dose independent rect. 2 5
125 18.91 atmosphere 1010.0 270 < th dose independent rect. 2 9
136 18.92 precipitation 0.1 10 < th dose independent rect. 5 2
139 18.92 precipitation 0.1 10 < th dose dependent rect. 5 2
141 18.92 humidity 90.0 90 > th dose dependent rect. 3 22
142 18.92 humidity 90.0 90 > th dose dependent rect. 1 23
148 18.93 temperature 10.0 10 > th dose independent rect. 5 2
150 18.93 temperature 30.0 10 < th dose independent rect. 5 2
151 18.93 humidity 50.0 10 > th dose independent rect. 5 2
154 18.93 atmosphere 995.0 10 > th dose independent rect. 5 2
156 18.93 radiation 20.0 10 < th dose independent rect. 5 2
160 18.93 wind 9.0 10 < th dose independent rect. 7 22
161 18.93 temperature 10.0 10 > th dose independent rect. 7 22
162 18.93 humidity 70.0 720 > th dose dependent no NA NA
163 18.93 wind 3.0 90 < th dose dependent rect. 4 3
177 18.94 precipitation 0.1 10 < th dose independent rect. 7 22
184 18.94 precipitation 0.1 10 < th dose dependent rect. 7 22
185 18.94 humidity 70.0 720 > th dose dependent rect. 7 23
186 18.94 humidity 90.0 90 > th dose dependent rect. 8 23
188 18.95 temperature 20.0 720 < th dose independent rect. 4 10
190 18.95 atmosphere 1000.0 10 > th dose independent rect. 5 16
194 18.95 radiation 1.0 10 < th dose independent rect. 21 20
197 18.95 humidity 90.0 90 > th dose dependent rect. 16 20
203 18.95 humidity 90.0 270 > th dose dependent rect. 22 22
212 18.96 humidity 70.0 720 > th dose dependent rect. 2 19
240 18.98 temperature 20.0 720 > th dose independent rect. 6 11
244 18.98 radiation 1.0 10 > th dose dependent rect. 18 13
251 18.98 humidity 70.0 720 > th dose dependent rect. 4 23
254 18.98 humidity 90.0 270 > th dose dependent rect. 10 23
258 18.99 temperature 20.0 720 > th dose independent rect. 7 8
285 19.00 humidity 90.0 90 > th dose dependent no NA NA
286 19.00 radiation 1.0 10 > th dose dependent rect. 5 2
309 19.01 radiation 1.0 720 > th dose independent sin 2 NA
317 19.01 humidity 90.0 90 > th dose dependent rect. 3 20
333 19.01 humidity 90.0 90 > th dose dependent rect. 19 23
338 19.02 radiation 1.0 4320 < th dose independent rect. 7 9
340 19.02 precipitation 0.1 10 < th dose independent rect. 5 16
341 19.02 humidity 90.0 720 < th dose dependent rect. 18 5
348 19.02 precipitation 0.1 10 < th dose dependent rect. 5 16
359 19.03 radiation 1.0 10 > th dose independent sin 9 NA
361 19.03 humidity 80.0 10 > th dose independent rect. 5 6
370 19.03 radiation 1.0 10 < th dose dependent sin 9 NA
371 19.03 humidity 50.0 10 > th dose dependent rect. 5 2
372 19.03 radiation 1.0 720 < th dose dependent rect. 4 13
384 19.04 radiation 1.0 4320 > th dose independent rect. 7 9
390 19.04 radiation 1.0 10 < th dose dependent rect. 21 9
415 19.05 precipitation 0.1 10 < th dose independent rect. 21 8
426 19.05 precipitation 0.1 10 < th dose dependent rect. 21 8
429 19.05 radiation 1.0 10 < th dose dependent rect. 21 15
448 19.06 radiation 1.0 720 > th dose independent rect. 6 11
454 19.06 radiation 40.0 10 < th dose dependent rect. 5 2
457 19.06 radiation 1.0 10 < th dose dependent rect. 21 11
480 19.07 wind 9.0 10 < th dose independent rect. 21 8
482 19.07 wind 1.0 270 > th dose independent rect. 7 9
485 19.07 temperature 25.0 720 < th dose dependent sin 2 NA
488 19.07 humidity 90.0 720 < th dose dependent rect. 19 2
510 19.08 temperature 10.0 10 > th dose independent rect. 21 8
511 19.08 temperature 30.0 10 < th dose independent rect. 21 8
512 19.08 humidity 50.0 10 > th dose independent rect. 21 8
515 19.08 atmosphere 995.0 10 > th dose independent rect. 21 8
516 19.08 radiation 1.0 10 < th dose independent rect. 21 8
528 19.08 temperature 10.0 10 > th dose independent rect. 5 16
538 19.08 wind 1.0 30 > th dose independent rect. 7 22
540 19.08 humidity 90.0 270 > th dose dependent sin 9 NA
548 19.08 humidity 70.0 720 > th dose dependent rect. 7 7
555 19.08 humidity 90.0 720 < th dose dependent rect. 18 10
573 19.09 atmosphere 1005.0 10 > th dose independent rect. 5 6
574 19.09 atmosphere 1010.0 30 < th dose independent rect. 17 14
585 19.09 humidity 90.0 270 > th dose dependent rect. 21 17
587 19.09 humidity 90.0 270 > th dose dependent rect. 1 20
602 19.10 humidity 80.0 1440 < th dose independent rect. 11 1
613 19.10 radiation 1.0 720 < th dose dependent sin 1 NA
614 19.10 wind 3.0 90 < th dose dependent rect. 4 6
619 19.10 humidity 90.0 270 > th dose dependent rect. 21 15
642 19.11 precipitation 0.1 90 < th dose independent rect. 7 10
646 19.11 humidity 80.0 720 > th dose independent rect. 18 21
650 19.11 humidity 50.0 10 > th dose dependent rect. 5 6
657 19.11 precipitation 0.1 90 < th dose dependent rect. 7 10
666 19.11 radiation 1.0 720 < th dose dependent rect. 21 20
673 19.12 radiation 1.0 720 > th dose independent rect. 6 9
674 19.12 temperature 10.0 90 > th dose independent rect. 7 10
675 19.12 atmosphere 1015.0 90 < th dose independent rect. 7 10
679 19.12 radiation 30.0 90 < th dose independent rect. 17 14
681 19.12 temperature 15.0 270 > th dose independent rect. 1 20
687 19.12 temperature 30.0 90 < th dose dependent rect. 7 9
721 19.13 humidity 80.0 1440 > th dose independent rect. 11 1
738 19.13 radiation 1.0 720 < th dose independent rect. 4 13
739 19.13 atmosphere 995.0 90 > th dose independent rect. 17 14
751 19.13 temperature 10.0 10 > th dose dependent rect. 22 7
778 19.14 atmosphere 1010.0 720 < th dose independent rect. 18 19
811 19.15 radiation 1.0 10 < th dose independent sin 10 NA
818 19.15 humidity 50.0 90 > th dose independent rect. 17 14
819 19.15 radiation 1.0 10 < th dose independent rect. 21 15
820 19.15 wind 9.0 10 < th dose independent rect. 5 16
824 19.15 atmosphere 1010.0 720 < th dose independent rect. 18 17
856 19.16 humidity 50.0 14400 > th dose independent rect. 3 6
860 19.16 radiation 1.0 10 < th dose independent rect. 21 11
866 19.16 humidity 50.0 270 > th dose independent rect. 2 17
870 19.16 radiation 1.0 4320 < th dose dependent rect. 14 3
887 19.16 humidity 90.0 720 < th dose dependent rect. 15 22
892 19.17 radiation 1.0 720 < th dose independent sin 1 NA
895 19.17 atmosphere 1010.0 90 < th dose independent rect. 4 7
896 19.17 wind 1.0 90 > th dose independent rect. 21 8
906 19.17 atmosphere 1015.0 10 < th dose independent rect. 7 22
962 19.18 humidity 90.0 90 > th dose dependent rect. 3 18
973 19.19 humidity 60.0 43200 > th dose independent rect. 2 1
997 19.19 atmosphere 995.0 10 > th dose independent rect. 7 22