Os02g0494700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA glycosylase family protein.
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Os02g0494700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA glycosylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 256.05 | 0.752 | 2.94 | 0.5 | 0.0169 | -0.65 | -0.943 | -3.46 | -0.0869 | 3.94 | 4.9 | 648 | -- | -- |
| 265.77 | 0.759 | 2.88 | 0.364 | 0.0188 | -0.177 | -0.935 | -- | -0.0479 | 5.36 | 3.9 | 556 | -- | -- |
| 258.16 | 0.748 | 2.93 | 0.495 | 0.0356 | -0.71 | -- | -3.8 | -0.0877 | 3.72 | 5.165 | 576 | -- | -- |
| 268.93 | 0.764 | 2.88 | 0.423 | 0.00753 | -0.202 | -- | -- | -0.0401 | 17.2 | 3.3 | 707 | -- | -- |
| 258.11 | 0.748 | 2.94 | 0.507 | -- | -0.723 | -- | -3.89 | -0.08 | -- | 5.15 | 589 | -- | -- |
| 267.06 | 0.766 | 2.88 | 0.37 | 0.0793 | -- | 1.12 | -- | -0.0331 | 18.4 | -- | -- | -- | -- |
| 269.55 | 0.769 | 2.88 | 0.352 | 0.128 | -- | -- | -- | -0.031 | 21.7 | -- | -- | -- | -- |
| 268.85 | 0.764 | 2.88 | 0.416 | -- | -0.24 | -- | -- | -0.0458 | -- | 3.055 | 726 | -- | -- |
| 271.78 | 0.772 | 2.88 | -- | 0.177 | 0.138 | -- | -- | -0.0617 | 19.2 | 3.3 | 707 | -- | -- |
| 270.53 | 0.769 | 2.87 | 0.354 | -- | -- | -- | -- | -0.0312 | -- | -- | -- | -- | -- |
| 272.82 | 0.773 | 2.89 | -- | 0.129 | -- | -- | -- | -0.0703 | 21.9 | -- | -- | -- | -- |
| 272.82 | 0.772 | 2.88 | -- | -- | 0.107 | -- | -- | -0.0609 | -- | 2.328 | 743 | -- | -- |
| 273.83 | 0.772 | 2.88 | -- | -- | -- | -- | -- | -0.0704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.32 | wind | 7.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 2 | 240.33 | wind | 7.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 4 | 240.35 | wind | 7.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 8 | 240.40 | wind | 7.0 | 90 | > th | dose independent | rect. | 7 | 2 |
| 12 | 240.41 | wind | 7.0 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 18 | 241.75 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 33 | 245.77 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 35 | 246.40 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 8 |
| 39 | 247.04 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 50 | 247.55 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 17 |
| 54 | 247.76 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 59 | 248.01 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 63 | 248.01 | temperature | 20.0 | 90 | < th | dose independent | rect. | 9 | 10 |
| 64 | 248.01 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 67 | 248.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 69 | 248.02 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 70 | 248.03 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 3 |
| 76 | 248.03 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 82 | 248.04 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 86 | 248.04 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 92 | 248.09 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 15 |
| 118 | 248.45 | wind | 3.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 158 | 248.78 | wind | 5.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 176 | 249.27 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 2 | 19 |
| 216 | 250.55 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 225 | 250.74 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 288 | 251.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 290 | 251.37 | wind | 5.0 | 720 | > th | dose independent | rect. | 1 | 9 |
| 319 | 251.86 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 326 | 251.87 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 1 |
| 329 | 251.88 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 355 | 252.10 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 365 | 252.28 | wind | 5.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 376 | 252.42 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 393 | 252.65 | wind | 5.0 | 90 | > th | dose dependent | rect. | 18 | 3 |
| 402 | 252.74 | radiation | 10.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 403 | 252.75 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 444 | 253.16 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 454 | 253.19 | wind | 5.0 | 720 | < th | dose independent | rect. | 4 | 9 |
| 464 | 253.23 | wind | 5.0 | 720 | < th | dose independent | sin | 6 | NA |
| 478 | 253.41 | wind | 5.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 490 | 253.53 | wind | 5.0 | 720 | > th | dose independent | sin | 6 | NA |
| 497 | 253.56 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 502 | 253.63 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 19 |
| 503 | 253.63 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 504 | 253.64 | wind | 5.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 531 | 253.80 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 545 | 253.85 | wind | 1.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 568 | 254.00 | wind | 1.0 | 270 | < th | dose dependent | rect. | 2 | 2 |
| 578 | 254.04 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 582 | 254.05 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 586 | 254.07 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 8 |
| 602 | 254.15 | wind | 5.0 | 720 | < th | dose independent | rect. | 20 | 17 |
| 612 | 254.20 | wind | 5.0 | 720 | < th | dose independent | rect. | 20 | 19 |
| 624 | 254.28 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 633 | 254.31 | wind | 5.0 | 720 | > th | dose independent | rect. | 16 | 20 |
| 645 | 254.37 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 668 | 254.40 | wind | 7.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 672 | 254.42 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 701 | 254.64 | wind | 7.0 | 10 | < th | dose independent | sin | 10 | NA |
| 713 | 254.69 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 18 |
| 716 | 254.70 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 15 |
| 723 | 254.74 | radiation | 20.0 | 270 | > th | dose independent | rect. | 6 | 1 |
| 739 | 254.76 | wind | 5.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 754 | 254.83 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 763 | 254.87 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 803 | 255.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 812 | 255.03 | temperature | 25.0 | 30 | < th | dose independent | rect. | 24 | 21 |
| 813 | 255.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 822 | 255.05 | wind | 5.0 | 30 | > th | dose dependent | sin | 10 | NA |
| 887 | 255.25 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 897 | 255.29 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 903 | 255.30 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 936 | 255.37 | wind | 3.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 958 | 255.41 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 962 | 255.42 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 995 | 255.48 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |