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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0493200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0205) R2 : 0.00378
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0566 (0.0431) R2dN8 : 0.00487 R2N8 : 0.00378
σ : 0.385
deviance : 68.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.04 0.382 2.8 0.09 0.416 0.507 -1.95 -2.53 0.106 17.7 1.94 752 -- --
66.4 0.38 2.83 0.13 0.836 1.13 -0.0846 -- 0.0885 18.1 0.03779 801 -- --
67.75 0.386 2.82 -0.0297 0.101 -0.121 -- 0.00391 0.0546 22.5 17.96 485 -- --
66.3 0.379 2.82 0.0915 0.801 1.09 -- -- 0.102 18.3 0.03997 812 -- --
67.54 0.383 2.81 0.0199 -- 0.132 -- -0.302 0.087 -- 14.99 1337 -- --
67.97 0.386 2.81 -0.0255 0.0475 -- -0.125 -- 0.0553 15.7 -- -- -- --
68.01 0.386 2.81 -0.0274 0.0467 -- -- -- 0.0546 15.1 -- -- -- --
67.24 0.382 2.81 0.0514 -- 0.286 -- -- 0.0844 -- 0.05991 1434 -- --
66.47 0.38 2.82 -- 0.791 1.06 -- -- 0.0863 18.2 0.3228 806 -- --
68.14 0.386 2.81 -0.0294 -- -- -- -- 0.0534 -- -- -- -- --
68.03 0.386 2.81 -- 0.0472 -- -- -- 0.0576 15.1 -- -- -- --
67.28 0.382 2.81 -- -- 0.252 -- -- 0.0776 -- 0.05995 1411 -- --
68.16 0.385 2.81 -- -- -- -- -- 0.0566 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.35 wind 9.0 1440 < th dose independent rect. 23 1
2 61.35 temperature 10.0 1440 > th dose independent rect. 23 1
5 61.35 temperature 30.0 1440 < th dose independent rect. 23 1
9 61.35 humidity 50.0 1440 > th dose independent rect. 23 1
19 61.35 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 61.35 radiation 1.0 1440 < th dose independent rect. 23 1
40 61.35 temperature 10.0 1440 > th dose independent rect. 24 23
43 61.35 radiation 1.0 1440 < th dose dependent rect. 23 1
50 61.43 humidity 90.0 30 < th dose independent rect. 22 1
51 61.44 temperature 25.0 30 > th dose independent rect. 22 1
52 61.44 atmosphere 1005.0 30 > th dose dependent rect. 22 1
54 61.49 atmosphere 1005.0 30 > th dose independent rect. 22 1
55 61.49 temperature 20.0 30 > th dose dependent rect. 22 1
60 61.55 precipitation 0.1 30 < th dose independent rect. 22 1
61 61.55 precipitation 0.1 30 < th dose dependent rect. 22 1
64 61.58 wind 1.0 30 > th dose independent rect. 22 1
65 61.58 humidity 80.0 30 > th dose independent rect. 22 1
66 61.60 wind 3.0 30 < th dose independent rect. 22 1
70 61.60 temperature 10.0 30 > th dose independent rect. 22 1
72 61.60 temperature 30.0 30 < th dose independent rect. 22 1
73 61.60 humidity 50.0 30 > th dose independent rect. 22 1
77 61.60 atmosphere 1010.0 30 < th dose independent rect. 22 1
79 61.60 radiation 1.0 30 < th dose independent rect. 22 1
84 61.60 temperature 10.0 30 > th dose independent rect. 23 23
85 61.60 radiation 1.0 30 < th dose dependent rect. 22 1
90 61.61 wind 9.0 30 < th dose dependent rect. 22 1
94 61.64 humidity 90.0 30 < th dose dependent rect. 22 1
96 61.65 humidity 50.0 30 > th dose dependent rect. 22 1
98 61.73 wind 1.0 30 > th dose dependent rect. 22 1
102 61.90 atmosphere 1015.0 30 < th dose dependent rect. 22 1
107 62.03 temperature 30.0 30 < th dose dependent rect. 22 1
152 63.05 wind 9.0 30 < th dose independent rect. 23 23
170 64.12 wind 1.0 30 < th dose independent rect. 17 7
184 64.24 precipitation 0.1 1440 > th dose independent rect. 9 4
185 64.24 precipitation 0.1 1440 > th dose dependent rect. 9 4
190 64.51 humidity 90.0 270 > th dose dependent rect. 8 15
197 64.71 humidity 90.0 270 > th dose dependent rect. 20 1
199 64.77 wind 1.0 30 < th dose dependent rect. 17 7
215 64.86 precipitation 0.1 1440 > th dose independent rect. 9 1
216 64.86 precipitation 0.1 1440 > th dose dependent rect. 9 1
226 65.05 humidity 90.0 270 > th dose dependent rect. 20 3
227 65.07 humidity 90.0 1440 > th dose independent rect. 10 3
235 65.13 humidity 90.0 1440 > th dose dependent rect. 10 1
239 65.16 temperature 20.0 90 < th dose dependent rect. 12 4
240 65.16 temperature 20.0 10 < th dose dependent rect. 12 5
243 65.18 humidity 90.0 270 > th dose dependent sin 20 NA
258 65.31 temperature 20.0 90 < th dose independent rect. 12 4
288 65.43 humidity 90.0 1440 < th dose independent rect. 10 2
306 65.50 radiation 1.0 720 < th dose independent rect. 7 16
307 65.51 humidity 50.0 270 > th dose dependent rect. 19 17
311 65.52 humidity 50.0 270 > th dose dependent rect. 19 20
325 65.57 temperature 15.0 30 > th dose dependent rect. 24 20
328 65.58 radiation 1.0 720 < th dose dependent rect. 6 17
332 65.59 humidity 70.0 90 > th dose dependent rect. 10 14
337 65.61 atmosphere 1015.0 720 < th dose independent rect. 1 10
340 65.61 humidity 70.0 270 > th dose dependent rect. 8 15
343 65.62 temperature 15.0 270 > th dose independent rect. 9 10
358 65.64 radiation 1.0 720 > th dose independent rect. 7 9
361 65.64 radiation 1.0 720 < th dose dependent rect. 7 8
364 65.65 radiation 1.0 720 < th dose independent rect. 7 9
399 65.67 temperature 10.0 10 > th dose dependent rect. 24 22
400 65.68 radiation 1.0 720 > th dose independent rect. 7 7
401 65.68 atmosphere 1015.0 720 < th dose independent rect. 23 12
406 65.69 humidity 80.0 90 > th dose independent rect. 10 14
410 65.70 radiation 1.0 720 < th dose dependent rect. 4 19
416 65.71 radiation 1.0 720 < th dose independent rect. 4 19
417 65.71 precipitation 0.1 30 < th dose independent rect. 23 23
428 65.71 precipitation 0.1 30 < th dose dependent rect. 23 23
444 65.75 atmosphere 1015.0 720 < th dose independent rect. 23 4
462 65.77 temperature 15.0 30 > th dose dependent rect. 10 10
468 65.79 precipitation 0.1 1440 < th dose independent rect. 9 1
470 65.79 atmosphere 1015.0 720 < th dose independent rect. 23 20
472 65.79 precipitation 0.1 1440 < th dose dependent rect. 9 1
484 65.80 radiation 1.0 720 < th dose independent rect. 3 22
514 65.82 radiation 1.0 720 < th dose dependent rect. 3 22
516 65.83 humidity 80.0 270 > th dose independent rect. 20 1
517 65.83 radiation 1.0 720 > th dose independent rect. 7 12
534 65.84 temperature 15.0 720 > th dose independent rect. 7 4
537 65.84 temperature 15.0 720 > th dose dependent rect. 10 1
542 65.85 temperature 20.0 30 > th dose independent rect. 20 4
557 65.86 humidity 70.0 90 > th dose independent rect. 20 16
558 65.86 humidity 80.0 270 > th dose independent rect. 6 17
564 65.87 wind 1.0 1440 > th dose independent rect. 11 1
568 65.87 wind 1.0 1440 < th dose dependent rect. 11 1
580 65.88 atmosphere 1015.0 720 < th dose independent rect. 23 14
606 65.90 atmosphere 995.0 30 > th dose independent rect. 23 23
607 65.90 wind 5.0 10 > th dose dependent rect. 9 2
611 65.90 wind 5.0 10 > th dose dependent rect. 4 7
631 65.92 precipitation 0.1 1440 > th dose independent rect. 6 1
633 65.92 precipitation 0.1 1440 > th dose dependent rect. 6 1
648 65.93 radiation 1.0 720 > th dose independent rect. 7 4
652 65.93 wind 7.0 10 < th dose independent rect. 24 14
654 65.93 atmosphere 1015.0 720 < th dose independent rect. 1 18
670 65.95 temperature 20.0 270 < th dose independent rect. 12 1
676 65.95 humidity 70.0 270 > th dose independent rect. 19 20
678 65.95 temperature 15.0 30 > th dose dependent rect. 10 12
679 65.95 radiation 1.0 720 < th dose dependent rect. 3 14
681 65.96 radiation 1.0 720 < th dose independent sin 0 NA
697 65.96 radiation 1.0 720 < th dose dependent rect. 19 22
698 65.97 precipitation 0.1 1440 > th dose independent rect. 2 1
701 65.97 atmosphere 1005.0 270 < th dose independent rect. 20 4
705 65.97 temperature 20.0 270 < th dose dependent rect. 12 1
706 65.97 precipitation 0.1 1440 > th dose dependent rect. 2 1
709 65.97 temperature 10.0 270 > th dose dependent rect. 9 10
724 65.98 radiation 1.0 720 < th dose independent rect. 3 14
746 65.99 radiation 1.0 720 < th dose independent rect. 19 22
761 66.00 radiation 1.0 720 < th dose dependent sin 0 NA
794 66.02 atmosphere 1015.0 720 < th dose independent rect. 1 2
801 66.02 humidity 70.0 270 > th dose independent rect. 19 18
803 66.02 wind 7.0 10 < th dose independent rect. 24 20
804 66.02 temperature 20.0 30 > th dose independent rect. 24 20
825 66.03 wind 1.0 1440 < th dose independent rect. 11 1
827 66.03 humidity 90.0 270 < th dose independent rect. 9 10
849 66.04 atmosphere 1005.0 30 > th dose dependent rect. 20 3
860 66.04 radiation 40.0 30 < th dose dependent rect. 23 23
861 66.05 humidity 80.0 270 > th dose independent rect. 19 4
863 66.05 humidity 90.0 270 > th dose independent rect. 9 5
866 66.05 wind 9.0 10 > th dose independent rect. 21 14
905 66.06 wind 5.0 10 > th dose independent rect. 10 1
909 66.06 humidity 60.0 10 < th dose independent rect. 10 1
914 66.06 wind 9.0 30 > th dose independent rect. 1 10
931 66.06 radiation 1.0 720 < th dose independent rect. 7 22
937 66.06 humidity 60.0 10 < th dose dependent rect. 10 1
992 66.07 humidity 70.0 270 > th dose dependent rect. 19 4