Os02g0491600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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Os02g0491600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.46 | 0.572 | 3 | -0.132 | 0.124 | -0.511 | -0.425 | 0.304 | -0.117 | 8.53 | 1005 | 1090 | -- | -- |
| 148.62 | 0.568 | 3 | -0.122 | 0.125 | -0.527 | -0.419 | -- | -0.115 | 8.37 | 1005 | 1081 | -- | -- |
| 149.01 | 0.569 | 3 | -0.144 | 0.128 | -0.503 | -- | 0.303 | -0.119 | 7.93 | 1005 | 1148 | -- | -- |
| 149.15 | 0.569 | 3 | -0.136 | 0.127 | -0.522 | -- | -- | -0.117 | 7.79 | 1005 | 1137 | -- | -- |
| 149.87 | 0.57 | 3 | -0.149 | -- | -0.517 | -- | 0.288 | -0.117 | -- | 1005 | 1217 | -- | -- |
| 152.98 | 0.58 | 3.02 | -0.073 | 0.144 | -- | -0.415 | -- | -0.212 | 7.24 | -- | -- | -- | -- |
| 153.41 | 0.58 | 3.02 | -0.0826 | 0.146 | -- | -- | -- | -0.212 | 6.67 | -- | -- | -- | -- |
| 150.01 | 0.57 | 3 | -0.138 | -- | -0.538 | -- | -- | -0.114 | -- | 1005 | 1216 | -- | -- |
| 149.62 | 0.57 | 3 | -- | 0.129 | -0.497 | -- | -- | -0.105 | 7.86 | 1005 | 1088 | -- | -- |
| 154.52 | 0.581 | 3.02 | -0.0792 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 153.59 | 0.58 | 3.02 | -- | 0.145 | -- | -- | -- | -0.203 | 6.7 | -- | -- | -- | -- |
| 150.49 | 0.571 | 3 | -- | -- | -0.509 | -- | -- | -0.103 | -- | 1005 | 1175 | -- | -- |
| 154.69 | 0.581 | 3.02 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.89 | wind | 1 | 30 | < th | dose dependent | rect. | 12 | 2 |
| 4 | 142.59 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 1 |
| 8 | 142.79 | wind | 1 | 10 | < th | dose independent | rect. | 22 | 1 |
| 10 | 142.79 | wind | 1 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 12 | 142.96 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 12 |
| 17 | 143.55 | wind | 1 | 10 | < th | dose dependent | rect. | 17 | 6 |
| 26 | 143.89 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 56 | 146.27 | wind | 3 | 10 | > th | dose independent | rect. | 7 | 1 |
| 61 | 146.63 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 75 | 146.63 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 94 | 147.06 | wind | 1 | 10 | < th | dose independent | rect. | 17 | 6 |
| 104 | 147.59 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 119 | 147.61 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 120 | 147.64 | wind | 1 | 10 | < th | dose independent | rect. | 11 | 12 |
| 122 | 147.65 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 123 | 147.69 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 125 | 147.79 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 126 | 147.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 128 | 147.82 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 129 | 147.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 137 | 147.91 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 144 | 147.94 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 153 | 147.95 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 157 | 147.95 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 174 | 147.96 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 184 | 147.97 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 186 | 147.98 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 199 | 147.99 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 214 | 148.03 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 217 | 148.04 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 238 | 148.05 | radiation | 10 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 239 | 148.06 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 1 |
| 249 | 148.10 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 259 | 148.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 275 | 148.13 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 278 | 148.13 | humidity | 60 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 310 | 148.14 | humidity | 60 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 315 | 148.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 336 | 148.16 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 375 | 148.22 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 376 | 148.22 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 5 | NA |
| 382 | 148.23 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 385 | 148.23 | radiation | 1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 397 | 148.25 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 412 | 148.27 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 451 | 148.27 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 488 | 148.32 | humidity | 50 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 506 | 148.34 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 558 | 148.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 559 | 148.38 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 594 | 148.40 | radiation | 10 | 14400 | < th | dose dependent | sin | 14 | NA |
| 595 | 148.40 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 602 | 148.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 615 | 148.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 22 |
| 617 | 148.42 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 663 | 148.44 | wind | 3 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 828 | 148.50 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 874 | 148.53 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 900 | 148.55 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 11 |
| 943 | 148.57 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 2 |
| 944 | 148.57 | humidity | 50 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 960 | 148.58 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 8 | 8 |