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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0487300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0275) R2 : 0.00407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0791 (0.058) R2dN8 : 0.00526 R2N8 : 0.00407
σ : 0.518
deviance : 123.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.01 0.515 3.04 0.142 0.0919 2.19 0.0266 4.73 0.105 15.2 19.49 269 -- --
122.97 0.52 3 0.0876 0.0468 0.0335 -0.202 -- 0.0919 16.8 19.49 269 -- --
119.69 0.51 3.06 0.142 0.0714 2.89 -- 6.33 0.0843 15.2 19.14 265 -- --
122.09 0.515 3 0.142 0.124 0.25 -- -- 0.142 15.8 29.1 300 -- --
120.01 0.51 3.05 0.172 -- 3.18 -- 6.77 0.0952 -- 19.02 264 -- --
122.97 0.52 3.01 0.0823 0.0438 -- -0.213 -- 0.0902 17 -- -- -- --
123.02 0.519 3 0.0827 0.0528 -- -- -- 0.0894 14.4 -- -- -- --
122.42 0.515 2.99 0.142 -- 0.216 -- -- 0.134 -- 25.7 846 -- --
122.56 0.516 3 -- 0.111 0.208 -- -- 0.109 15.2 31.8 177 -- --
123.18 0.519 3.01 0.0805 -- -- -- -- 0.0881 -- -- -- -- --
123.2 0.519 3.01 -- 0.0512 -- -- -- 0.0801 14.4 -- -- -- --
122.9 0.516 3 -- -- 0.157 -- -- 0.108 -- 25.7 841 -- --
123.35 0.518 3.01 -- -- -- -- -- 0.0791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.16 atmosphere 1005.0 90 < th dose dependent rect. 20 1
2 115.18 temperature 20.0 90 > th dose dependent rect. 20 2
4 115.76 wind 5.0 90 > th dose independent rect. 6 1
5 115.76 wind 5.0 90 > th dose dependent rect. 6 1
6 115.76 wind 5.0 90 > th dose dependent rect. 4 3
7 115.77 radiation 20.0 90 > th dose independent rect. 6 1
23 115.77 radiation 20.0 90 > th dose dependent rect. 6 1
42 115.82 humidity 80.0 90 < th dose dependent rect. 4 4
47 115.89 humidity 80.0 90 < th dose independent rect. 5 2
64 116.12 atmosphere 1005.0 10 < th dose dependent rect. 22 1
81 116.30 humidity 80.0 90 < th dose independent rect. 4 4
85 116.36 humidity 80.0 90 < th dose dependent rect. 5 2
87 116.46 wind 5.0 30 > th dose dependent rect. 1 7
117 116.82 radiation 1.0 30 < th dose dependent rect. 23 21
120 116.95 wind 9.0 10 > th dose independent rect. 13 1
132 116.95 wind 9.0 10 > th dose dependent rect. 13 1
156 117.03 wind 5.0 10 > th dose independent rect. 2 6
159 117.04 wind 3.0 90 > th dose independent rect. 20 2
163 117.06 wind 5.0 10 > th dose independent rect. 7 1
178 117.10 temperature 10.0 10 > th dose dependent rect. 23 21
190 117.32 radiation 1.0 10 < th dose independent rect. 23 21
196 117.38 temperature 20.0 10 > th dose independent rect. 20 3
223 117.71 wind 5.0 10 < th dose independent rect. 20 3
225 117.73 wind 5.0 90 < th dose independent rect. 20 2
236 117.86 atmosphere 1015.0 10 < th dose independent rect. 23 21
241 117.88 radiation 20.0 1440 < th dose independent rect. 24 7
246 117.93 wind 3.0 270 < th dose dependent rect. 18 1
271 117.99 wind 5.0 10 < th dose dependent rect. 20 2
279 118.04 temperature 20.0 270 < th dose dependent rect. 4 1
282 118.06 wind 7.0 30 < th dose independent rect. 23 21
296 118.13 wind 3.0 270 < th dose independent rect. 18 1
321 118.19 temperature 30.0 10 < th dose dependent rect. 5 18
323 118.20 atmosphere 1000.0 10 > th dose independent rect. 20 3
335 118.23 radiation 1.0 10 < th dose independent rect. 23 9
348 118.26 temperature 20.0 270 < th dose dependent rect. 3 3
350 118.27 wind 9.0 10 < th dose independent rect. 10 10
357 118.31 wind 1.0 30 > th dose dependent rect. 20 3
368 118.33 wind 9.0 270 < th dose independent rect. 7 11
369 118.33 wind 7.0 10 < th dose independent rect. 20 14
370 118.33 radiation 10.0 4320 < th dose dependent rect. 21 3
371 118.33 atmosphere 995.0 10 > th dose dependent rect. 5 18
373 118.35 radiation 1.0 10 < th dose independent rect. 23 7
380 118.39 humidity 80.0 10 < th dose independent rect. 5 1
387 118.39 humidity 80.0 10 < th dose dependent rect. 5 1
392 118.39 atmosphere 1015.0 10 < th dose dependent rect. 20 3
396 118.39 temperature 10.0 270 > th dose dependent rect. 22 13
420 118.42 temperature 10.0 10 > th dose independent rect. 20 3
422 118.42 temperature 30.0 10 < th dose independent rect. 20 3
423 118.42 humidity 50.0 10 > th dose independent rect. 20 3
427 118.42 atmosphere 1010.0 10 < th dose independent rect. 20 3
429 118.42 radiation 1.0 10 < th dose independent rect. 20 3
434 118.42 temperature 10.0 10 > th dose independent rect. 23 21
435 118.42 radiation 1.0 10 < th dose dependent rect. 20 3
447 118.43 atmosphere 1015.0 90 < th dose dependent rect. 20 1
451 118.43 temperature 30.0 10 < th dose dependent rect. 5 13
452 118.43 temperature 25.0 90 < th dose dependent rect. 5 13
456 118.45 humidity 60.0 270 < th dose independent rect. 18 1
472 118.45 humidity 60.0 10 > th dose independent rect. 20 14
480 118.46 humidity 60.0 270 < th dose dependent rect. 18 1
484 118.47 humidity 50.0 10 > th dose dependent rect. 20 3
486 118.48 temperature 10.0 1440 > th dose independent rect. 21 3
489 118.48 temperature 30.0 1440 < th dose independent rect. 21 3
493 118.48 humidity 50.0 1440 > th dose independent rect. 21 3
500 118.48 atmosphere 995.0 1440 > th dose independent rect. 21 3
501 118.48 radiation 1.0 1440 < th dose independent rect. 21 3
521 118.48 atmosphere 1015.0 10 < th dose independent rect. 23 6
522 118.48 radiation 40.0 10 < th dose independent rect. 20 14
523 118.48 temperature 10.0 1440 > th dose independent rect. 24 21
531 118.48 radiation 40.0 43200 < th dose dependent rect. 21 3
532 118.48 temperature 10.0 10 > th dose dependent rect. 23 6
538 118.49 precipitation 0.1 30 < th dose independent rect. 23 21
542 118.49 precipitation 0.1 30 < th dose dependent rect. 23 21
545 118.50 radiation 1.0 10 < th dose dependent rect. 23 13
550 118.51 radiation 1.0 10 < th dose dependent rect. 23 9
557 118.52 precipitation 0.1 10 < th dose independent rect. 20 3
559 118.52 precipitation 0.1 10 < th dose dependent rect. 20 3
566 118.54 wind 5.0 720 < th dose independent rect. 8 1
574 118.56 wind 7.0 270 < th dose independent rect. 18 13
600 118.62 temperature 10.0 10 > th dose dependent rect. 10 10
605 118.64 atmosphere 995.0 270 > th dose independent rect. 18 13
616 118.65 humidity 80.0 90 < th dose independent rect. 20 12
621 118.66 wind 1.0 30 > th dose independent rect. 5 18
625 118.67 temperature 10.0 10 > th dose independent rect. 10 10
627 118.67 atmosphere 1015.0 10 < th dose independent rect. 10 10
629 118.67 temperature 10.0 10 > th dose independent rect. 20 14
632 118.67 atmosphere 995.0 10 > th dose independent rect. 20 14
637 118.68 humidity 90.0 1440 < th dose dependent rect. 5 2
640 118.69 precipitation 0.1 10 < th dose independent rect. 10 10
641 118.69 radiation 30.0 270 < th dose independent rect. 18 13
643 118.69 precipitation 0.1 10 < th dose dependent rect. 10 10
645 118.70 temperature 10.0 270 > th dose independent rect. 7 11
646 118.70 atmosphere 1015.0 270 < th dose independent rect. 7 11
647 118.70 temperature 10.0 270 > th dose independent rect. 18 13
648 118.70 humidity 50.0 270 > th dose independent rect. 18 13
651 118.70 temperature 30.0 10 < th dose dependent rect. 5 5
659 118.71 wind 9.0 30 < th dose dependent rect. 23 21
661 118.72 wind 9.0 10 < th dose independent rect. 23 6
662 118.72 temperature 10.0 10 > th dose independent rect. 23 6
663 118.72 temperature 30.0 10 < th dose independent rect. 23 6
664 118.72 humidity 50.0 10 > th dose independent rect. 23 6
667 118.72 atmosphere 995.0 10 > th dose independent rect. 23 6
673 118.72 temperature 10.0 10 > th dose independent rect. 5 18
675 118.72 atmosphere 1015.0 10 < th dose independent rect. 5 18
676 118.72 humidity 50.0 30 > th dose independent rect. 23 21
704 118.74 wind 1.0 10 > th dose independent rect. 10 10
726 118.76 precipitation 0.1 10 < th dose independent rect. 5 18
732 118.76 precipitation 0.1 10 < th dose dependent rect. 5 18
739 118.78 precipitation 0.1 270 < th dose independent rect. 18 13
742 118.78 precipitation 0.1 270 < th dose dependent rect. 18 13
784 118.83 temperature 10.0 10 > th dose dependent rect. 8 12
793 118.85 atmosphere 1015.0 270 < th dose independent rect. 22 13
831 118.86 atmosphere 995.0 10 > th dose independent rect. 23 21
849 118.87 precipitation 0.1 10 < th dose independent rect. 23 6
854 118.87 precipitation 0.1 10 < th dose dependent rect. 23 6
911 118.90 humidity 50.0 30 > th dose independent rect. 10 10
919 118.90 atmosphere 995.0 10 > th dose independent rect. 5 18
927 118.91 radiation 20.0 1440 < th dose independent rect. 19 12
928 118.91 humidity 50.0 10 > th dose dependent rect. 23 6
932 118.92 precipitation 0.1 10 < th dose independent rect. 20 14
933 118.92 wind 9.0 10 < th dose independent rect. 5 18
936 118.92 precipitation 0.1 10 < th dose dependent rect. 20 14
964 118.95 temperature 20.0 270 < th dose dependent rect. 3 18
975 118.97 temperature 10.0 1440 > th dose independent rect. 11 10
978 118.97 precipitation 0.1 270 < th dose independent rect. 7 11
979 118.97 temperature 10.0 1440 > th dose independent rect. 21 14
982 118.97 atmosphere 995.0 1440 > th dose independent rect. 21 14
987 118.97 precipitation 0.1 270 < th dose dependent rect. 7 11