Os02g0486400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0486400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.93 | 0.376 | 9.63 | -0.231 | 0.0817 | -0.3 | 0.695 | -2.45 | 0.638 | 7.24 | 22.43 | 2155 | -- | -- |
| 77.53 | 0.413 | 9.72 | -1.05 | 0.148 | -0.242 | 0.16 | -- | 0.452 | 3.09 | 22.43 | 2155 | -- | -- |
| 65.12 | 0.376 | 9.64 | -0.245 | 0.0939 | -0.291 | -- | -2.36 | 0.631 | 5.5 | 22.5 | 2108 | -- | -- |
| 77.6 | 0.413 | 9.72 | -1.05 | 0.15 | -0.246 | -- | -- | 0.45 | 2.6 | 22.43 | 2155 | -- | -- |
| 65.57 | 0.377 | 9.64 | -0.243 | -- | -0.291 | -- | -2.37 | 0.635 | -- | 22.47 | 2140 | -- | -- |
| 80.86 | 0.422 | 9.7 | -0.965 | 0.0868 | -- | 0.451 | -- | 0.532 | 5.91 | -- | -- | -- | -- |
| 81.29 | 0.422 | 9.7 | -0.962 | 0.0948 | -- | -- | -- | 0.53 | 4.58 | -- | -- | -- | -- |
| 78.35 | 0.412 | 9.72 | -1.09 | -- | -0.305 | -- | -- | 0.428 | -- | 22.2 | 2200 | -- | -- |
| 104.52 | 0.476 | 9.67 | -- | 0.00725 | 0.194 | -- | -- | 0.65 | 14.1 | 28.8 | 406 | -- | -- |
| 81.77 | 0.423 | 9.7 | -0.959 | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
| 105.69 | 0.481 | 9.68 | -- | 0.0772 | -- | -- | -- | 0.637 | 4.9 | -- | -- | -- | -- |
| 104.53 | 0.476 | 9.67 | -- | -- | 0.191 | -- | -- | 0.651 | -- | 28.8 | 406 | -- | -- |
| 106 | 0.481 | 9.68 | -- | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.54 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 3 | 60.69 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 16 | 61.02 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 35 | 61.33 | wind | 3 | 14400 | < th | dose dependent | sin | 5 | NA |
| 53 | 61.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 74 | 61.73 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 82 | 61.79 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 83 | 61.82 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 113 | 62.09 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 118 | 62.16 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 136 | 62.28 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 143 | 62.33 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 165 | 62.50 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 208 | 62.78 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 217 | 62.81 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 219 | 62.82 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 227 | 62.86 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 260 | 63.01 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 264 | 63.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 269 | 63.06 | wind | 3 | 14400 | < th | dose independent | sin | 10 | NA |
| 291 | 63.12 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 333 | 63.22 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 339 | 63.23 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 343 | 63.24 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 356 | 63.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 368 | 63.29 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 371 | 63.29 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 432 | 63.36 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 443 | 63.37 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 446 | 63.37 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 457 | 63.38 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 468 | 63.38 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 472 | 63.38 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 565 | 63.44 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 6 | NA |
| 617 | 63.46 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 4 | NA |
| 630 | 63.47 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 7 | NA |
| 710 | 63.51 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 761 | 63.53 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 769 | 63.54 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 797 | 63.55 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 23 |