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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0484200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0453) R2 : 0.376
β1 : 1.2 (0.182) R2dD : 0.0767 R2D : -0.0486
β2 : 0.79 (0.107) R2dC : 0.0761 R2C : 0.0805
β3 : -2.38 (0.17) R2dE : 0.34 R2E : 0.226
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0137 (0.1) R2dN8 : 2.56e-05 R2N8 : 0.00172
σ : 0.838
deviance : 323.63
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_____
C
peak time of C : 12.8
E
wheather : atmosphere
threshold : 1009
memory length : 24805
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 16.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.31 0.828 3.3 0.768 0.746 -2.25 1.91 -1.12 -0.0554 11.6 1010 24475 12.5 --
310.95 0.821 3.28 1.08 0.698 -2.38 1.8 -- -0.0396 12 1009 24603 13.7 --
324.3 0.839 3.31 0.869 0.722 -2.35 -- -1.11 -0.0339 12.3 1010 24518 11.7 --
323.63 0.838 3.27 1.2 0.79 -2.38 -- -- -0.0137 12.8 1009 24805 16.2 --
343.44 0.863 3.33 0.635 -- -2.62 -- -2.1 -0.193 -- 1009 22479 13.1 --
445.23 0.989 3.36 0.017 0.805 -- 2 -- -0.436 11.8 -- -- -- --
461.2 1.01 3.36 0.102 0.811 -- -- -- -0.423 12.6 -- -- -- --
350.29 0.872 3.29 1.02 -- -2.72 -- -- -0.0535 -- 1009 22393 12.7 --
340.11 0.859 3.34 -- 0.743 -1.93 -- -- -0.192 13.4 1011 20898 17.5 --
502.44 1.05 3.37 0.0732 -- -- -- -- -0.437 -- -- -- -- --
461.47 1 3.36 -- 0.81 -- -- -- -0.434 12.6 -- -- -- --
365.91 0.891 3.3 -- -- -1.92 -- -- -0.168 -- 1011 21137 16.2 --
502.58 1.05 3.38 -- -- -- -- -- -0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 291.08 humidity 50 43200 > th dose dependent rect. 16 7
6 291.66 humidity 90 43200 < th dose dependent rect. 16 6
12 292.12 humidity 70 43200 > th dose dependent rect. 20 1
47 293.20 humidity 90 43200 < th dose dependent rect. 16 1
84 294.39 humidity 80 43200 > th dose independent rect. 16 8
91 294.63 humidity 80 43200 < th dose independent rect. 16 8
101 294.76 humidity 50 43200 > th dose dependent sin 18 NA
160 296.04 humidity 90 43200 < th dose dependent sin 19 NA
232 296.95 humidity 70 43200 < th dose independent rect. 14 8
244 297.03 humidity 70 43200 > th dose independent rect. 14 8
247 297.06 humidity 70 43200 < th dose independent rect. 13 10
263 297.20 humidity 70 43200 > th dose independent rect. 13 10
322 297.67 humidity 70 43200 < th dose independent sin 18 NA
325 297.71 humidity 60 43200 > th dose independent rect. 12 1
335 297.77 humidity 80 43200 < th dose independent rect. 18 5
347 297.86 humidity 70 43200 > th dose independent sin 19 NA
358 297.92 humidity 70 43200 < th dose independent rect. 8 16
360 297.96 humidity 70 43200 > th dose independent rect. 6 17
611 299.14 humidity 60 43200 < th dose independent rect. 12 2
778 299.91 humidity 80 43200 < th dose independent rect. 20 1
799 299.98 humidity 80 43200 > th dose independent rect. 20 2
823 300.05 humidity 80 43200 < th dose independent rect. 19 3
877 300.28 humidity 70 43200 < th dose independent no NA NA
878 300.28 humidity 70 43200 < th dose independent rect. 11 23
900 300.36 humidity 70 43200 > th dose independent rect. 12 23
933 300.50 humidity 70 43200 > th dose independent no NA NA
986 300.67 humidity 50 43200 > th dose dependent no NA NA