FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0483800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0425) R2 : 0.72
β1 : -0.303 (0.179) R2dD : 0.00413 R2D : 0.0264
β2 : 2.42 (0.0963) R2dC : 0.379 R2C : 0.42
β3 : 2.34 (0.155) R2dE : 0.224 R2E : 0.31
β4 : -2.16 (0.366) R2dD*C : 0.0212 R2D*C : 0.0317
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.181 (0.103) R2dN8 : 0.00281 R2N8 : 0.021
σ : 0.759
deviance : 265.3
__
_____
C
peak time of C : 11.9
E
wheather : temperature
threshold : 21.71
memory length : 5463
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.38 0.751 5.22 0.0834 2.39 2.26 -2.09 -4.18 -0.3 11.9 24.9 4600 -- --
265.3 0.759 5.25 -0.303 2.42 2.34 -2.16 -- -0.181 11.9 21.71 5463 -- --
274.33 0.771 5.22 0.0194 2.4 2.27 -- -4.25 -0.3 11.9 24.85 4576 -- --
284.43 0.785 5.27 -0.398 2.45 2.29 -- -- -0.205 11.8 21.8 5377 -- --
578.17 1.12 5.27 -0.0398 -- 2.63 -- -4.21 -0.193 -- 24.81 3887 -- --
374.69 0.907 5.46 -1.87 2.47 -- -2.08 -- -1.03 12 -- -- -- --
393.44 0.929 5.47 -1.96 2.48 -- -- -- -1.04 12 -- -- -- --
564.84 1.11 5.29 -0.928 -- 3.04 -- -- -0.133 -- 25 2401 -- --
289.7 0.793 5.26 -- 2.38 2.45 -- -- -0.122 11.9 21.6 5379 -- --
781.57 1.31 5.52 -2.03 -- -- -- -- -1.08 -- -- -- -- --
494.2 1.04 5.42 -- 2.51 -- -- -- -0.824 12 -- -- -- --
589.64 1.13 5.31 -- -- 3.13 -- -- -0.119 -- 24.92 2396 -- --
890.42 1.39 5.47 -- -- -- -- -- -0.851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.05 humidity 90 43200 > th dose dependent rect. 4 3
3 245.98 humidity 90 43200 > th dose dependent rect. 1 17
5 246.05 humidity 90 43200 > th dose dependent rect. 5 1
18 246.43 humidity 90 43200 > th dose dependent sin 4 NA
24 246.58 humidity 90 43200 > th dose dependent rect. 3 6
75 247.72 humidity 90 43200 > th dose independent rect. 22 15
81 247.75 humidity 90 43200 > th dose independent rect. 22 20
94 247.97 humidity 90 43200 > th dose independent sin 5 NA
120 248.26 humidity 90 43200 > th dose dependent rect. 15 22
124 248.28 humidity 90 43200 > th dose dependent rect. 10 23
130 248.30 humidity 90 43200 > th dose dependent no NA NA
139 248.35 humidity 90 43200 > th dose independent rect. 24 13
165 248.47 humidity 90 43200 > th dose independent rect. 16 21
179 248.53 humidity 90 43200 > th dose dependent rect. 4 23
232 248.84 humidity 90 43200 > th dose independent no NA NA
244 248.89 humidity 90 43200 > th dose independent rect. 10 23
253 248.96 humidity 90 43200 > th dose independent rect. 24 23
256 248.99 humidity 90 43200 > th dose independent rect. 8 23
266 249.05 humidity 90 43200 > th dose independent rect. 5 23
278 249.15 humidity 90 43200 > th dose independent rect. 2 23
319 249.50 humidity 90 43200 > th dose independent rect. 22 1
355 249.99 wind 5 43200 > th dose dependent rect. 9 6
377 250.20 wind 7 43200 < th dose independent rect. 5 10
383 250.28 wind 7 43200 < th dose independent rect. 7 8
385 250.30 wind 7 43200 > th dose independent rect. 5 10
388 250.37 radiation 1 43200 < th dose dependent rect. 18 1
395 250.41 wind 7 43200 > th dose independent rect. 7 8
401 250.46 wind 5 43200 > th dose dependent rect. 11 1
410 250.56 radiation 1 43200 < th dose dependent rect. 18 9
415 250.60 temperature 20 4320 > th dose dependent rect. 2 1
431 250.83 humidity 90 43200 < th dose independent rect. 8 19
442 250.90 humidity 90 43200 < th dose independent rect. 6 22
451 250.97 temperature 20 43200 < th dose independent rect. 14 1
455 250.98 temperature 20 4320 > th dose dependent rect. 17 11
458 251.01 humidity 90 43200 < th dose independent rect. 22 22
464 251.04 temperature 20 43200 > th dose independent rect. 14 1
476 251.13 humidity 90 43200 < th dose independent rect. 16 21
481 251.18 wind 7 43200 < th dose independent rect. 9 5
493 251.25 radiation 1 43200 < th dose dependent rect. 6 3
499 251.30 humidity 90 43200 > th dose independent rect. 4 4
501 251.31 temperature 25 4320 > th dose independent rect. 1 11
524 251.47 temperature 25 4320 < th dose independent rect. 1 11
535 251.52 wind 7 43200 > th dose independent rect. 9 5
539 251.53 humidity 90 43200 < th dose independent rect. 24 23
545 251.54 radiation 1 43200 < th dose dependent rect. 18 13
548 251.56 humidity 90 43200 < th dose independent no NA NA
557 251.61 temperature 20 4320 > th dose dependent rect. 21 1
577 251.75 wind 7 43200 < th dose independent rect. 10 3
581 251.77 radiation 1 43200 > th dose independent rect. 9 1
582 251.77 humidity 90 43200 < th dose independent rect. 2 23
591 251.80 humidity 90 43200 > th dose independent rect. 10 1
605 251.87 radiation 1 43200 < th dose independent rect. 9 2
609 251.89 humidity 90 43200 < th dose independent rect. 10 23
619 251.94 wind 7 43200 > th dose independent rect. 10 3
625 251.96 humidity 90 43200 > th dose independent sin 16 NA
627 251.98 humidity 90 43200 < th dose independent rect. 18 1
634 252.03 humidity 90 43200 < th dose independent rect. 15 11
647 252.10 radiation 1 43200 > th dose independent rect. 8 4
654 252.13 radiation 1 43200 > th dose independent rect. 18 1
666 252.14 temperature 20 4320 > th dose dependent sin 12 NA
668 252.16 radiation 1 43200 < th dose independent rect. 8 4
670 252.16 temperature 20 720 > th dose dependent rect. 18 18
677 252.19 humidity 90 43200 < th dose independent rect. 16 9
686 252.25 radiation 1 14400 < th dose dependent rect. 2 3
698 252.32 humidity 90 43200 < th dose independent rect. 10 1
703 252.34 humidity 90 43200 > th dose independent rect. 15 11
708 252.37 humidity 90 43200 < th dose independent sin 17 NA
721 252.42 radiation 1 43200 < th dose dependent rect. 9 3
735 252.49 radiation 1 43200 < th dose dependent rect. 18 20
752 252.55 wind 7 43200 < th dose independent rect. 11 1
760 252.58 temperature 20 1440 > th dose dependent rect. 1 8
766 252.62 humidity 90 43200 < th dose independent rect. 22 1
818 252.82 temperature 20 1440 > th dose dependent rect. 2 6
857 253.03 radiation 1 14400 < th dose dependent rect. 4 1
915 253.26 radiation 1 43200 < th dose dependent rect. 4 4
916 253.26 radiation 1 43200 < th dose dependent rect. 2 6
950 253.37 radiation 1 43200 > th dose independent rect. 6 3
967 253.39 radiation 1 43200 < th dose independent rect. 6 3