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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0482400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ornithine decarboxylase (EC 4.1.1.17) (ODC).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0338) R2 : 0.000722
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0408 (0.0711) R2dN8 : 0.000932 R2N8 : 0.000722
σ : 0.636
deviance : 185.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.99 0.592 2.78 -0.0146 0.0157 6.48 -0.203 -8.51 0.0707 22.6 0.768 11 14 8.87
164.2 0.597 2.77 0.00548 0.0185 3.8 -0.323 -- 0.0633 21.8 0.3111 11 13.9 9.34
159.16 0.588 2.78 -0.00702 0.0172 6.5 -- -8.67 0.0713 0.442 0.7672 11 14 9.54
164.6 0.598 2.77 0.0116 0.0217 3.74 -- -- 0.0629 22.3 0.3539 11 13.9 9.39
159.18 0.588 2.78 -0.00585 -- 6.51 -- -8.67 0.0713 -- 0.7638 11 14 9.55
185.09 0.638 2.77 0.0647 0.087 -- -0.0835 -- 0.0483 21.9 -- -- -- --
185.12 0.637 2.77 0.0681 0.0879 -- -- -- 0.0486 21.7 -- -- -- --
163.9 0.596 2.77 0.00257 -- 3.81 -- -- 0.0645 -- 0.6501 11 13.9 9.88
164.6 0.598 2.77 -- 0.022 3.75 -- -- 0.062 22.2 0.353 11 13.9 9.39
185.58 0.637 2.77 0.069 -- -- -- -- 0.0485 -- -- -- -- --
185.24 0.637 2.78 -- 0.088 -- -- -- 0.041 21.8 -- -- -- --
163.9 0.596 2.77 -- -- 3.81 -- -- 0.0644 -- 0.65 11 13.9 9.88
185.7 0.636 2.77 -- -- -- -- -- 0.0408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.37 wind 1e+00 10 < th dose dependent rect. 14 9
2 162.68 wind 1e+00 10 < th dose dependent rect. 21 2
15 167.81 wind 1e+00 10 < th dose independent rect. 14 9
16 167.90 humidity 6e+01 30 < th dose dependent rect. 13 1
19 168.04 wind 1e+00 10 < th dose independent rect. 21 2
36 169.48 wind 1e+00 90 < th dose independent rect. 16 1
37 169.48 wind 1e+00 90 < th dose dependent rect. 16 1
43 170.37 humidity 5e+01 90 < th dose independent rect. 13 1
71 170.46 radiation 2e+01 30 > th dose dependent rect. 13 1
234 170.87 radiation 4e+01 90 > th dose independent rect. 12 2
440 172.15 wind 1e+00 720 < th dose independent rect. 16 1
454 172.40 wind 1e+00 720 < th dose dependent rect. 15 1
525 172.88 humidity 5e+01 90 < th dose dependent sin 7 NA
578 173.66 precipitation 1e-01 720 > th dose independent rect. 15 1
579 173.66 precipitation 1e-01 720 > th dose dependent rect. 15 1
583 173.83 humidity 5e+01 10 < th dose independent sin 13 NA
584 173.84 humidity 5e+01 10 < th dose dependent sin 12 NA
585 173.85 humidity 5e+01 10 > th dose independent sin 13 NA
638 174.32 radiation 4e+01 30 > th dose independent sin 13 NA
644 174.39 humidity 8e+01 90 < th dose independent rect. 3 3
645 174.40 radiation 4e+01 30 < th dose independent sin 13 NA
695 174.78 humidity 8e+01 10 < th dose dependent rect. 4 2
767 175.00 humidity 8e+01 10 < th dose independent rect. 4 2
793 175.09 humidity 9e+01 720 < th dose independent rect. 14 1
838 175.20 humidity 8e+01 90 < th dose dependent rect. 3 3
866 175.56 humidity 8e+01 270 < th dose independent rect. 2 1
868 175.56 humidity 8e+01 270 < th dose dependent rect. 2 1
892 175.70 radiation 4e+01 270 < th dose independent rect. 6 11
957 175.92 atmosphere 1e+03 30 > th dose independent rect. 12 2