Os02g0478600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S15A.
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Os02g0478600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S15A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.82 | 0.372 | 13.6 | 0.759 | 0.829 | -0.721 | 0.434 | 0.882 | 0.0539 | 19.5 | 19.81 | 2908 | -- | -- |
| 64.23 | 0.373 | 13.6 | 0.865 | 0.784 | -0.875 | 0.373 | -- | 0.06 | 19.3 | 19.7 | 2889 | -- | -- |
| 63.31 | 0.371 | 13.6 | 0.741 | 0.834 | -0.721 | -- | 0.9 | 0.0523 | 19.4 | 19.87 | 2892 | -- | -- |
| 64.45 | 0.374 | 13.6 | 0.894 | 0.831 | -0.899 | -- | -- | 0.086 | 19.3 | 19.8 | 2890 | -- | -- |
| 98.54 | 0.462 | 13.6 | 0.856 | -- | -0.797 | -- | 0.466 | 0.0727 | -- | 20.1 | 2103 | -- | -- |
| 78.33 | 0.415 | 13.5 | 1.37 | 0.811 | -- | 0.589 | -- | 0.299 | 19.6 | -- | -- | -- | -- |
| 79.26 | 0.417 | 13.5 | 1.36 | 0.814 | -- | -- | -- | 0.301 | 19.5 | -- | -- | -- | -- |
| 98.93 | 0.463 | 13.6 | 0.966 | -- | -0.886 | -- | -- | 0.106 | -- | 19.3 | 2108 | -- | -- |
| 71.39 | 0.394 | 13.6 | -- | 0.801 | -1.3 | -- | -- | -0.066 | 19.2 | 18.6 | 21753 | -- | -- |
| 114.61 | 0.5 | 13.5 | 1.35 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 128.02 | 0.529 | 13.6 | -- | 0.802 | -- | -- | -- | 0.149 | 19.6 | -- | -- | -- | -- |
| 105.7 | 0.479 | 13.6 | -- | -- | -1.28 | -- | -- | -0.0962 | -- | 16.13 | 47520 | -- | -- |
| 162.52 | 0.595 | 13.5 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 13 | 62.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 14 | 62.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 27 | 62.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 29 | 62.68 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 40 | 62.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 41 | 62.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 75 | 63.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 80 | 63.05 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 82 | 63.07 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 89 | 63.09 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 98 | 63.13 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 110 | 63.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 127 | 63.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 140 | 63.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 154 | 63.36 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 155 | 63.37 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 188 | 63.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 228 | 63.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 229 | 63.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 249 | 63.87 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 272 | 63.96 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 303 | 64.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 312 | 64.05 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 331 | 64.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 348 | 64.13 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 361 | 64.16 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 402 | 64.23 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 411 | 64.25 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 452 | 64.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 471 | 64.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 498 | 64.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 502 | 64.41 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 511 | 64.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 523 | 64.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 527 | 64.43 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 538 | 64.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 548 | 64.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 655 | 64.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 701 | 64.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 719 | 64.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 812 | 64.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 870 | 64.86 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 871 | 64.86 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 882 | 64.87 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 896 | 64.89 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 968 | 64.96 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 999 | 64.99 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |