Os02g0477100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0477100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.5 | 0.386 | 7.9 | -0.692 | 0.688 | -1.44 | -0.146 | -0.359 | -0.622 | 7.24 | 29.7 | 10 | -- | -- |
| 67.7 | 0.383 | 7.91 | -0.742 | 0.687 | -1.44 | -0.155 | -- | -0.634 | 7.28 | 29.85 | 10 | -- | -- |
| 67.56 | 0.383 | 7.9 | -0.696 | 0.688 | -1.44 | -- | -0.355 | -0.623 | 7.22 | 29.67 | 10 | -- | -- |
| 67.73 | 0.383 | 7.9 | -0.755 | 0.686 | -1.44 | -- | -- | -0.638 | 7.25 | 29.7 | 10 | -- | -- |
| 91.2 | 0.445 | 7.91 | -0.647 | -- | -1.37 | -- | -0.475 | -0.607 | -- | 27.94 | 5 | -- | -- |
| 96.06 | 0.459 | 7.84 | -0.407 | 0.736 | -- | -0.0577 | -- | -0.351 | 9.91 | -- | -- | -- | -- |
| 96.07 | 0.459 | 7.84 | -0.409 | 0.736 | -- | -- | -- | -0.351 | 9.91 | -- | -- | -- | -- |
| 91.47 | 0.445 | 7.91 | -0.716 | -- | -1.35 | -- | -- | -0.623 | -- | 28.03 | 3 | -- | -- |
| 81.16 | 0.422 | 7.87 | -- | 0.657 | -1.13 | -- | -- | -0.497 | 7.91 | 29.7 | 10 | -- | -- |
| 128.57 | 0.53 | 7.86 | -0.418 | -- | -- | -- | -- | -0.351 | -- | -- | -- | -- | -- |
| 100.48 | 0.469 | 7.83 | -- | 0.738 | -- | -- | -- | -0.306 | 9.96 | -- | -- | -- | -- |
| 104.38 | 0.476 | 7.89 | -- | -- | -1.15 | -- | -- | -0.509 | -- | 28.24 | 2 | -- | -- |
| 133.17 | 0.539 | 7.85 | -- | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 2 | 67.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 67.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 67.57 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 5 | 67.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 67.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 67.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 67.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 15 | 68.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 16 | 68.53 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 20 | 68.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 24 | 69.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 28 | 69.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 43 | 70.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 81 | 71.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 99 | 72.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 111 | 72.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 128 | 73.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 174 | 73.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 187 | 73.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 189 | 73.76 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 212 | 73.97 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 215 | 73.99 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 281 | 74.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 308 | 74.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 310 | 74.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 502 | 75.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 754 | 76.79 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 23 |
| 801 | 77.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 815 | 77.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 817 | 77.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 825 | 77.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 931 | 77.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 16 |